The 2.0 version of rSNPBase

Variant report

Variant rs1339722
Chromosome Location chr1:180469343-180469344
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180428000-180470000 Weak transcription Rectal Smooth Muscle rectum
2 chr1:180431200-180470200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr1:180432000-180470600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr1:180434200-180470200 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr1:180437600-180470400 Weak transcription Right Ventricle heart
6 chr1:180437600-180470600 Weak transcription Spleen Spleen
7 chr1:180437600-180471000 Weak transcription Lung lung
8 chr1:180444800-180470600 Weak transcription Esophagus oesophagus
9 chr1:180447000-180470400 Weak transcription Colonic Mucosa Colon
10 chr1:180448400-180470200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr1:180452000-180470000 Weak transcription Fetal Heart heart
12 chr1:180453800-180470600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:180454600-180470600 Weak transcription H9 Cell Line embryonic stem cell
14 chr1:180455400-180470000 Weak transcription Liver Liver
15 chr1:180455600-180469400 Weak transcription Brain Inferior Temporal Lobe brain
16 chr1:180455600-180469400 Weak transcription Thymus Thymus
17 chr1:180455600-180469600 Weak transcription Gastric stomach
18 chr1:180455600-180470200 Weak transcription H1 Cell Line embryonic stem cell
19 chr1:180455600-180470200 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr1:180455600-180470200 Weak transcription Brain Substantia Nigra brain
21 chr1:180455600-180471000 Weak transcription Left Ventricle heart
22 chr1:180456000-180470200 Weak transcription Adipose Nuclei Adipose
23 chr1:180456000-180471000 Weak transcription ES-WA7 Cell Line embryonic stem cell
24 chr1:180456400-180470200 Weak transcription Placenta Amnion Placenta Amnion
25 chr1:180456600-180470200 Weak transcription Small Intestine intestine
26 chr1:180456800-180470000 Weak transcription iPS-15b Cell Line embryonic stem cell
27 chr1:180456800-180470600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr1:180457200-180470400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr1:180457400-180470200 Weak transcription Fetal Kidney kidney
30 chr1:180457400-180470400 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr1:180457600-180470600 Weak transcription NH-A brain
32 chr1:180458000-180471000 Weak transcription Aorta Aorta
33 chr1:180459200-180471000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
34 chr1:180459400-180469600 Weak transcription Primary T cells fromperipheralblood blood
35 chr1:180459600-180470400 Weak transcription Stomach Smooth Muscle stomach
36 chr1:180461400-180469400 Strong transcription HSMM muscle
37 chr1:180462000-180469400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr1:180462600-180470400 Weak transcription Fetal Muscle Trunk muscle
39 chr1:180462800-180470000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr1:180463200-180470200 Weak transcription Primary monocytes fromperipheralblood blood
41 chr1:180463800-180470000 Weak transcription Brain Hippocampus Middle brain
42 chr1:180464000-180470000 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr1:180464000-180470200 Weak transcription Primary hematopoietic stem cells blood
44 chr1:180464200-180469400 Weak transcription Placenta Placenta
45 chr1:180464200-180469800 Weak transcription Primary B cells from peripheral blood blood
46 chr1:180464200-180470000 Weak transcription Fetal Lung lung
47 chr1:180464400-180469400 Weak transcription Monocytes-CD14+_RO01746 blood
48 chr1:180464400-180470400 Weak transcription Fetal Intestine Large intestine
49 chr1:180464400-180470600 Weak transcription Fetal Thymus thymus
50 chr1:180464600-180470600 Weak transcription Stomach Mucosa stomach

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Last update: Aug 31, 2015