Variant report

Variant	rs61811628
Chromosome Location	chr1:180530207-180530208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180530082..180533605-chr1:180534162..180536876,3	K562	blood:
2	chr1:180529943..180534795-chr1:180578153..180581956,5	K562	blood:
3	chr1:180530185..180532877-chr1:180542986..180545564,3	K562	blood:
4	chr1:180520741..180525768-chr1:180529838..180532812,4	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10157891	1.00[AFR][1000 genomes]
rs10733004	1.00[AFR][1000 genomes]
rs10737343	1.00[AFR][1000 genomes]
rs10737344	1.00[AFR][1000 genomes]
rs10737345	1.00[AFR][1000 genomes]
rs10753213	1.00[AFR][1000 genomes]
rs10798763	1.00[AFR][1000 genomes]
rs10798764	1.00[AFR][1000 genomes]
rs10913972	1.00[AFR][1000 genomes]
rs10914011	1.00[AFR][1000 genomes]
rs12144149	1.00[AFR][1000 genomes]
rs12565152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1339722	1.00[AFR][1000 genomes]
rs1418100	1.00[AFR][1000 genomes]
rs1418103	1.00[AFR][1000 genomes]
rs1556935	1.00[AFR][1000 genomes]
rs1556938	0.84[AMR][1000 genomes]
rs1591898	1.00[AFR][1000 genomes]
rs1970401	0.84[AMR][1000 genomes]
rs2153327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2331742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41267628	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41267634	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4304539	1.00[AFR][1000 genomes]
rs4532796	1.00[AFR][1000 genomes]
rs4540612	1.00[AFR][1000 genomes]
rs4652510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61809269	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61809270	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61809273	0.84[AMR][1000 genomes]
rs61809274	0.84[AMR][1000 genomes]
rs61809275	0.84[AMR][1000 genomes]
rs61809276	0.84[AMR][1000 genomes]
rs61811598	1.00[AFR][1000 genomes]
rs61811599	1.00[AFR][1000 genomes]
rs61811602	1.00[AFR][1000 genomes]
rs61811603	1.00[AFR][1000 genomes]
rs61811605	1.00[AFR][1000 genomes]
rs61811613	1.00[AFR][1000 genomes]
rs61811614	1.00[AFR][1000 genomes]
rs61811617	1.00[AFR][1000 genomes]
rs61811618	1.00[AFR][1000 genomes]
rs61811619	1.00[AFR][1000 genomes]
rs61811621	1.00[AFR][1000 genomes]
rs61811627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61811630	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811631	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61811635	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6425624	1.00[AFR][1000 genomes]
rs6425630	1.00[AFR][1000 genomes]
rs6425647	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6665615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6677367	1.00[AFR][1000 genomes]
rs6680754	1.00[AFR][1000 genomes]
rs6683484	1.00[AFR][1000 genomes]
rs6691333	1.00[AFR][1000 genomes]
rs7526743	1.00[AFR][1000 genomes]
rs7542568	0.83[EUR][1000 genomes]
rs7546030	1.00[AFR][1000 genomes]
rs7548707	1.00[AFR][1000 genomes]
rs946634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180516600-180536800	Weak transcription	Psoas Muscle	Psoas
2	chr1:180525200-180534400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:180529000-180531800	Enhancers	K562	blood
4	chr1:180529200-180530400	Enhancers	Duodenum Mucosa	Duodenum
5	chr1:180529200-180530400	Flanking Active TSS	A549	lung
6	chr1:180529200-180530400	Enhancers	HSMM	muscle
7	chr1:180529200-180530800	Enhancers	Hela-S3	cervix
8	chr1:180529200-180530800	Enhancers	NH-A	brain
9	chr1:180529200-180531000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:180529200-180531000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:180529200-180531000	Enhancers	HMEC	breast
12	chr1:180529200-180532800	Enhancers	HSMMtube	muscle
13	chr1:180529200-180533000	Enhancers	Osteobl	bone
14	chr1:180529400-180530800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:180529400-180531000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:180529400-180531200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:180529400-180532800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:180529600-180530600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:180529600-180532800	Enhancers	NHEK	skin
20	chr1:180530000-180530400	Weak transcription	HepG2	liver
21	chr1:180530000-180530600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr1:180530000-180531600	Weak transcription	Fetal Brain Female	brain
23	chr1:180530000-180535000	Enhancers	Left Ventricle	heart
24	chr1:180530200-180530400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:180530200-180530400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:180530200-180530400	Enhancers	Stomach Mucosa	stomach
27	chr1:180530200-180530600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:180530200-180530600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:180530200-180530600	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr1:180530200-180530800	Enhancers	Pancreas	Pancrea
31	chr1:180530200-180530800	Enhancers	Right Atrium	heart
32	chr1:180530200-180530800	Enhancers	Right Ventricle	heart
33	chr1:180530200-180531200	Enhancers	Fetal Heart	heart
34	chr1:180530200-180531200	Enhancers	Fetal Muscle Leg	muscle
35	chr1:180530200-180532600	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links