The 2.0 version of rSNPBase

Variant report

Variant rs7546030
Chromosome Location chr1:180343923-180343924
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180309600-180345400 Weak transcription Primary T cells from cord blood blood
2 chr1:180310000-180348200 Weak transcription Primary B cells from cord blood blood
3 chr1:180314000-180345800 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr1:180330200-180345400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:180330600-180349000 Weak transcription HMEC breast
6 chr1:180333000-180356200 Weak transcription Ovary ovary
7 chr1:180334200-180348000 Weak transcription Primary T helper cells fromperipheralblood blood
8 chr1:180335800-180349000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr1:180336200-180344400 Weak transcription Psoas Muscle Psoas
10 chr1:180336200-180347600 Weak transcription NHDF-Ad bronchial
11 chr1:180337000-180349000 Weak transcription Esophagus oesophagus
12 chr1:180337800-180348000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr1:180338400-180345000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
14 chr1:180338400-180348400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr1:180338600-180347800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:180338600-180347800 Weak transcription Aorta Aorta
17 chr1:180338600-180348000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:180338600-180349000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr1:180338600-180349000 Weak transcription Left Ventricle heart
20 chr1:180339600-180345400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:180339600-180349000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:180340400-180345400 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr1:180340800-180347600 Weak transcription HSMM muscle
24 chr1:180341200-180401400 Weak transcription Osteobl bone
25 chr1:180341800-180347000 Weak transcription Fetal Stomach stomach
26 chr1:180342000-180344200 Enhancers HUES48 Cell Line embryonic stem cell
27 chr1:180342200-180346800 Weak transcription Fetal Intestine Small intestine
28 chr1:180342200-180348000 Weak transcription Gastric stomach
29 chr1:180342600-180344000 Enhancers HUES64 Cell Line embryonic stem cell
30 chr1:180343200-180344000 Enhancers iPS-18 Cell Line embryonic stem cell
31 chr1:180343400-180344000 Enhancers iPS-15b Cell Line embryonic stem cell
32 chr1:180343400-180348000 Weak transcription Fetal Lung lung
33 chr1:180343600-180356400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr1:180343800-180348000 Weak transcription Duodenum Mucosa Duodenum
35 chr1:180343800-180348200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015