The 2.0 version of rSNPBase

Variant report

Variant rs2794971
Chromosome Location chr1:180270607-180270608
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180240800-180270800 Weak transcription NHLF lung
2 chr1:180244200-180278200 Weak transcription HSMMtube muscle
3 chr1:180245200-180282400 Weak transcription Fetal Intestine Large intestine
4 chr1:180245400-180280400 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr1:180247800-180284200 Weak transcription Fetal Thymus thymus
6 chr1:180248800-180276400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr1:180250400-180279800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr1:180250600-180278600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:180254400-180280400 Weak transcription Fetal Stomach stomach
10 chr1:180254800-180282400 Weak transcription Fetal Muscle Leg muscle
11 chr1:180257400-180278200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr1:180257400-180278600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr1:180257600-180289600 Weak transcription Hela-S3 cervix
14 chr1:180257800-180278600 Weak transcription HMEC breast
15 chr1:180257800-180278600 Weak transcription NHEK skin
16 chr1:180257800-180279800 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:180257800-180287200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr1:180257800-180296200 Weak transcription Left Ventricle heart
19 chr1:180258400-180285200 Weak transcription Ovary ovary
20 chr1:180259000-180271800 Weak transcription Primary T cells from cord blood blood
21 chr1:180259000-180278600 Weak transcription Brain Cingulate Gyrus brain
22 chr1:180261200-180284200 Weak transcription K562 blood
23 chr1:180262200-180276000 Weak transcription Primary B cells from peripheral blood blood
24 chr1:180262400-180275000 Weak transcription Primary hematopoietic stem cells blood
25 chr1:180262800-180280000 Weak transcription Primary B cells from cord blood blood
26 chr1:180264000-180278800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:180265600-180277600 Weak transcription HepG2 liver
28 chr1:180267000-180275400 Weak transcription Dnd41 blood
29 chr1:180267000-180284400 Weak transcription GM12878-XiMat blood
30 chr1:180268200-180282800 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr1:180269000-180278200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:180269000-180278600 Weak transcription HSMM muscle
33 chr1:180269200-180270800 Weak transcription NHDF-Ad bronchial
34 chr1:180269200-180275400 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr1:180269200-180282000 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr1:180270200-180271200 Enhancers A549 lung
37 chr1:180270400-180271000 Enhancers Muscle Satellite Cultured Cells --
38 chr1:180270400-180271200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:180270600-180271000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
40 chr1:180270600-180271000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
41 chr1:180270600-180271000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin

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Last update: Aug 31, 2015