The 2.0 version of rSNPBase

Variant report

Variant rs4540612
Chromosome Location chr1:180378880-180378881
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180341200-180401400 Weak transcription Osteobl bone
2 chr1:180348200-180382600 Weak transcription Pancreas Pancrea
3 chr1:180349400-180407000 Weak transcription Esophagus oesophagus
4 chr1:180352400-180381400 Weak transcription Hela-S3 cervix
5 chr1:180352800-180399400 Weak transcription Fetal Thymus thymus
6 chr1:180354800-180386600 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr1:180355200-180402600 Weak transcription HMEC breast
8 chr1:180355600-180390800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr1:180356600-180381400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr1:180356600-180394000 Weak transcription NHDF-Ad bronchial
11 chr1:180356800-180380800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr1:180356800-180406200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr1:180356800-180407000 Weak transcription Aorta Aorta
14 chr1:180360400-180394200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr1:180361000-180381000 Weak transcription Primary T regulatory cells fromperipheralblood blood
16 chr1:180361000-180383400 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr1:180361400-180407600 Weak transcription HepG2 liver
18 chr1:180361600-180382800 Weak transcription Liver Liver
19 chr1:180362600-180379200 Weak transcription Muscle Satellite Cultured Cells --
20 chr1:180363400-180385200 Weak transcription Fetal Kidney kidney
21 chr1:180364000-180394200 Weak transcription HSMMtube muscle
22 chr1:180364400-180381600 Weak transcription Brain Hippocampus Middle brain
23 chr1:180364400-180383400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr1:180364400-180384200 Weak transcription Brain Anterior Caudate brain
25 chr1:180364400-180392800 Weak transcription Brain Cingulate Gyrus brain
26 chr1:180364400-180401600 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr1:180364600-180380800 Weak transcription Fetal Stomach stomach
28 chr1:180364600-180401000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:180364800-180379200 Weak transcription Fetal Adrenal Gland Adrenal Gland
30 chr1:180364800-180383800 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr1:180364800-180390200 Weak transcription Fetal Muscle Trunk muscle
32 chr1:180365000-180391200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr1:180365000-180401000 Weak transcription Ovary ovary
34 chr1:180365200-180381000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr1:180365200-180390200 Weak transcription Brain Angular Gyrus brain
36 chr1:180365200-180420600 Weak transcription A549 lung
37 chr1:180365400-180380600 Weak transcription K562 blood
38 chr1:180365400-180402600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr1:180365600-180384600 Weak transcription Fetal Muscle Leg muscle
40 chr1:180365800-180379000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:180366200-180379200 Weak transcription Primary hematopoietic stem cells blood
42 chr1:180366200-180390200 Weak transcription Fetal Brain Male brain
43 chr1:180366600-180379000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:180366600-180379400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr1:180366600-180393600 Weak transcription NH-A brain
46 chr1:180366800-180379200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr1:180366800-180379200 Weak transcription Primary B cells from peripheral blood blood
48 chr1:180366800-180379600 Weak transcription Fetal Intestine Large intestine
49 chr1:180366800-180380000 Weak transcription GM12878-XiMat blood
50 chr1:180366800-180380200 Weak transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015