The 2.0 version of rSNPBase

Variant report

Variant rs2794966
Chromosome Location chr1:180254661-180254662
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180231000-180257200 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr1:180236800-180257600 Weak transcription Fetal Brain Male brain
3 chr1:180238600-180255600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr1:180239200-180257200 Weak transcription Osteobl bone
5 chr1:180240200-180259000 Weak transcription Colon Smooth Muscle Colon
6 chr1:180240600-180255600 Weak transcription Liver Liver
7 chr1:180240800-180258200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr1:180240800-180259400 Weak transcription HepG2 liver
9 chr1:180240800-180264000 Weak transcription Small Intestine intestine
10 chr1:180240800-180270800 Weak transcription NHLF lung
11 chr1:180241000-180254800 Weak transcription HMEC breast
12 chr1:180241000-180259600 Weak transcription NH-A brain
13 chr1:180241200-180257000 Weak transcription K562 blood
14 chr1:180242000-180268400 Weak transcription NHDF-Ad bronchial
15 chr1:180242600-180257200 Weak transcription Brain Substantia Nigra brain
16 chr1:180243600-180257200 Weak transcription GM12878-XiMat blood
17 chr1:180243800-180255400 Weak transcription Fetal Brain Female brain
18 chr1:180243800-180268200 Weak transcription Pancreas Pancrea
19 chr1:180244000-180257200 Weak transcription Brain Hippocampus Middle brain
20 chr1:180244000-180257400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:180244200-180257200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr1:180244200-180257800 Weak transcription Brain Germinal Matrix brain
23 chr1:180244200-180258200 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr1:180244200-180258400 Weak transcription Duodenum Mucosa Duodenum
25 chr1:180244200-180263000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr1:180244200-180270400 Weak transcription Muscle Satellite Cultured Cells --
27 chr1:180244200-180278200 Weak transcription HSMMtube muscle
28 chr1:180244600-180257600 Weak transcription Fetal Kidney kidney
29 chr1:180244800-180257600 Weak transcription Fetal Muscle Trunk muscle
30 chr1:180245000-180259800 Weak transcription Colonic Mucosa Colon
31 chr1:180245200-180256200 Weak transcription Esophagus oesophagus
32 chr1:180245200-180258200 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr1:180245200-180259200 Weak transcription Spleen Spleen
34 chr1:180245200-180261600 Weak transcription Right Ventricle heart
35 chr1:180245200-180282400 Weak transcription Fetal Intestine Large intestine
36 chr1:180245400-180255600 Weak transcription Primary B cells from cord blood blood
37 chr1:180245400-180255800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr1:180245400-180257200 Weak transcription Brain Cingulate Gyrus brain
39 chr1:180245400-180268200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:180245400-180280400 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr1:180245600-180257200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr1:180246000-180255800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr1:180246000-180257600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
44 chr1:180246400-180258000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:180246600-180257400 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr1:180246800-180264200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr1:180247600-180262000 Weak transcription Aorta Aorta
48 chr1:180247800-180257400 Weak transcription ES-I3 Cell Line embryonic stem cell
49 chr1:180247800-180257600 Weak transcription Brain Angular Gyrus brain
50 chr1:180247800-180258800 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015