Variant report
Variant | rs9425879 |
---|---|
Chromosome Location | chr1:180304367-180304368 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10157891 | 1.00[ASN][1000 genomes] |
rs10737343 | 1.00[ASN][1000 genomes] |
rs10737344 | 1.00[ASN][1000 genomes] |
rs10737345 | 1.00[ASN][1000 genomes] |
rs10753210 | 1.00[ASN][1000 genomes] |
rs10753213 | 1.00[ASN][1000 genomes] |
rs10753214 | 1.00[ASN][1000 genomes] |
rs10753217 | 1.00[ASN][1000 genomes] |
rs10798744 | 1.00[ASN][1000 genomes] |
rs10798749 | 1.00[ASN][1000 genomes] |
rs10798763 | 1.00[ASN][1000 genomes] |
rs10798764 | 1.00[ASN][1000 genomes] |
rs10913972 | 1.00[ASN][1000 genomes] |
rs10914011 | 1.00[ASN][1000 genomes] |
rs10914019 | 1.00[ASN][1000 genomes] |
rs10914020 | 1.00[ASN][1000 genomes] |
rs1094597 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1094598 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1094599 | 1.00[ASN][1000 genomes] |
rs12027553 | 1.00[ASN][1000 genomes] |
rs12077904 | 1.00[ASN][1000 genomes] |
rs12144149 | 1.00[ASN][1000 genomes] |
rs12565152 | 1.00[ASN][1000 genomes] |
rs1339722 | 1.00[ASN][1000 genomes] |
rs1339723 | 1.00[ASN][1000 genomes] |
rs1339726 | 1.00[ASN][1000 genomes] |
rs1361363 | 1.00[ASN][1000 genomes] |
rs1361628 | 1.00[ASN][1000 genomes] |
rs1418100 | 1.00[ASN][1000 genomes] |
rs1418103 | 1.00[ASN][1000 genomes] |
rs1556935 | 1.00[ASN][1000 genomes] |
rs1556938 | 1.00[ASN][1000 genomes] |
rs1591898 | 1.00[ASN][1000 genomes] |
rs1934411 | 1.00[ASN][1000 genomes] |
rs1935283 | 1.00[ASN][1000 genomes] |
rs1961741 | 1.00[ASN][1000 genomes] |
rs2153753 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2262371 | 0.83[ASN][1000 genomes] |
rs2331739 | 1.00[ASN][1000 genomes] |
rs2764432 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2764434 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2764435 | 1.00[ASN][1000 genomes] |
rs2764436 | 1.00[ASN][1000 genomes] |
rs2764437 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2764438 | 1.00[ASN][1000 genomes] |
rs2764439 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2764440 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2764441 | 1.00[ASN][1000 genomes] |
rs2764442 | 1.00[ASN][1000 genomes] |
rs2764444 | 1.00[ASN][1000 genomes] |
rs2764451 | 0.83[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs2764452 | 0.83[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs2764453 | 0.81[ASN][1000 genomes] |
rs2764454 | 0.90[ASN][1000 genomes] |
rs2764456 | 1.00[ASN][1000 genomes] |
rs2764457 | 1.00[ASN][1000 genomes] |
rs2764458 | 1.00[ASN][1000 genomes] |
rs2764459 | 1.00[ASN][1000 genomes] |
rs2764461 | 1.00[ASN][1000 genomes] |
rs2764462 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2764467 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2764468 | 1.00[ASN][1000 genomes] |
rs2794965 | 0.90[ASN][1000 genomes] |
rs2794966 | 1.00[ASN][1000 genomes] |
rs2794967 | 1.00[ASN][1000 genomes] |
rs2794968 | 1.00[ASN][1000 genomes] |
rs2794969 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2794970 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2794971 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2794972 | 1.00[ASN][1000 genomes] |
rs2794973 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2794974 | 1.00[ASN][1000 genomes] |
rs2794975 | 1.00[ASN][1000 genomes] |
rs2794976 | 1.00[ASN][1000 genomes] |
rs4259605 | 1.00[ASN][1000 genomes] |
rs4281291 | 1.00[ASN][1000 genomes] |
rs4304539 | 1.00[ASN][1000 genomes] |
rs4333819 | 1.00[ASN][1000 genomes] |
rs4532796 | 0.83[ASN][1000 genomes] |
rs4540612 | 1.00[ASN][1000 genomes] |
rs4609392 | 1.00[ASN][1000 genomes] |
rs4651061 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs4651063 | 1.00[ASN][1000 genomes] |
rs4651066 | 0.91[ASN][1000 genomes] |
rs4651067 | 1.00[ASN][1000 genomes] |
rs4652501 | 1.00[ASN][1000 genomes] |
rs4652506 | 1.00[ASN][1000 genomes] |
rs61811560 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6425620 | 1.00[ASN][1000 genomes] |
rs6425621 | 1.00[ASN][1000 genomes] |
rs6425622 | 1.00[ASN][1000 genomes] |
rs6425623 | 1.00[ASN][1000 genomes] |
rs6425624 | 1.00[ASN][1000 genomes] |
rs6425626 | 1.00[ASN][1000 genomes] |
rs6425630 | 1.00[ASN][1000 genomes] |
rs6425642 | 1.00[ASN][1000 genomes] |
rs6659147 | 1.00[ASN][1000 genomes] |
rs6664944 | 1.00[ASN][1000 genomes] |
rs6665615 | 1.00[ASN][1000 genomes] |
rs6667478 | 1.00[ASN][1000 genomes] |
rs6669304 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs6677367 | 1.00[ASN][1000 genomes] |
rs6680754 | 1.00[ASN][1000 genomes] |
rs6682067 | 0.91[ASN][1000 genomes] |
rs6683484 | 1.00[ASN][1000 genomes] |
rs6684842 | 1.00[ASN][1000 genomes] |
rs6687873 | 1.00[ASN][1000 genomes] |
rs6691333 | 1.00[ASN][1000 genomes] |
rs6695360 | 1.00[ASN][1000 genomes] |
rs7515052 | 1.00[ASN][1000 genomes] |
rs7522928 | 1.00[ASN][1000 genomes] |
rs7526743 | 1.00[ASN][1000 genomes] |
rs7532972 | 1.00[ASN][1000 genomes] |
rs7543143 | 1.00[ASN][1000 genomes] |
rs7546030 | 1.00[ASN][1000 genomes] |
rs7548707 | 1.00[ASN][1000 genomes] |
rs7548884 | 1.00[ASN][1000 genomes] |
rs7555087 | 1.00[ASN][1000 genomes] |
rs822703 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs822704 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs863720 | 1.00[ASN][1000 genomes] |
rs863721 | 1.00[ASN][1000 genomes] |
rs946633 | 1.00[ASN][1000 genomes] |
rs946634 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1003739 | chr1:180027760-180483292 | Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
2 | nsv535217 | chr1:180027760-180483292 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
3 | nsv832004 | chr1:180128502-180335540 | Strong transcription Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
4 | nsv527918 | chr1:180279710-180443808 | Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
5 | nsv1013716 | chr1:180287338-180477072 | Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 39 gene(s) | inside rSNPs | diseases |
6 | nsv535221 | chr1:180287338-180477072 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 39 gene(s) | inside rSNPs | diseases |
7 | esv2762200 | chr1:180300936-180493841 | ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 40 gene(s) | inside rSNPs | diseases |
8 | nsv1003359 | chr1:180300936-180727561 | Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 48 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:180281000-180329400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
2 | chr1:180282800-180313400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr1:180295800-180309200 | Weak transcription | Primary B cells from cord blood | blood |
4 | chr1:180296600-180309000 | Weak transcription | Primary T cells from cord blood | blood |
5 | chr1:180300400-180309200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
6 | chr1:180303000-180305000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
7 | chr1:180303000-180307200 | Weak transcription | Dnd41 | blood |
8 | chr1:180303600-180312800 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
9 | chr1:180304000-180313000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |