The 2.0 version of rSNPBase

Variant report

Variant rs6684842
Chromosome Location chr1:180404453-180404454
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180349400-180407000 Weak transcription Esophagus oesophagus
2 chr1:180356800-180406200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr1:180356800-180407000 Weak transcription Aorta Aorta
4 chr1:180361400-180407600 Weak transcription HepG2 liver
5 chr1:180365200-180420600 Weak transcription A549 lung
6 chr1:180376200-180407400 Weak transcription NHLF lung
7 chr1:180379000-180430800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr1:180379800-180406000 Weak transcription Left Ventricle heart
9 chr1:180380400-180408000 Weak transcription Primary T cells fromperipheralblood blood
10 chr1:180381200-180406400 Weak transcription Fetal Stomach stomach
11 chr1:180382400-180410800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:180382600-180406000 Weak transcription Dnd41 blood
13 chr1:180382600-180406400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr1:180382600-180406600 Weak transcription Hela-S3 cervix
15 chr1:180389600-180406000 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr1:180389800-180410400 Weak transcription Fetal Intestine Large intestine
17 chr1:180391000-180409000 Weak transcription Primary T cells from cord blood blood
18 chr1:180391200-180410200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr1:180391400-180404800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:180391800-180408000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr1:180392200-180405400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:180392600-180446200 Weak transcription K562 blood
23 chr1:180394400-180407000 Weak transcription Psoas Muscle Psoas
24 chr1:180394400-180407800 Weak transcription Primary B cells from peripheral blood blood
25 chr1:180394600-180405000 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr1:180394600-180407000 Weak transcription Brain Germinal Matrix brain
27 chr1:180394800-180420200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr1:180396000-180404800 Weak transcription Fetal Lung lung
29 chr1:180398000-180408000 Weak transcription Fetal Heart heart
30 chr1:180398800-180405600 Weak transcription Primary B cells from cord blood blood
31 chr1:180399000-180420800 Weak transcription Primary T killer naive cells fromperipheralblood blood
32 chr1:180399400-180407000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr1:180399600-180420400 Weak transcription Primary T helper cells fromperipheralblood blood
34 chr1:180399600-180420400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:180401400-180413800 Weak transcription Small Intestine intestine
36 chr1:180401400-180420200 Weak transcription HSMM muscle
37 chr1:180401400-180430400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:180401800-180408800 Weak transcription Fetal Kidney kidney
39 chr1:180401800-180410200 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr1:180401800-180420800 Weak transcription NHDF-Ad bronchial
41 chr1:180402000-180405400 Weak transcription Muscle Satellite Cultured Cells --
42 chr1:180402000-180406000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:180402400-180411400 Weak transcription Spleen Spleen
44 chr1:180402800-180409000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr1:180403200-180404600 Weak transcription Fetal Intestine Small intestine
46 chr1:180403200-180407000 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr1:180403200-180408200 Weak transcription Placenta Placenta
48 chr1:180403200-180408800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr1:180403400-180407000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
50 chr1:180403400-180408800 Weak transcription HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015