Variant report

Variant	rs56138714
Chromosome Location	chr3:119071099-119071100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119069869..119072577-chr3:119075688..119077407,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10934492	0.84[ASN][1000 genomes]
rs12163543	0.93[ASN][1000 genomes]
rs12163575	0.93[ASN][1000 genomes]
rs12486197	0.80[AMR][1000 genomes]
rs12630032	0.85[ASN][1000 genomes]
rs12634505	0.88[ASN][1000 genomes]
rs12636459	0.87[ASN][1000 genomes]
rs61261775	0.93[ASN][1000 genomes]
rs7614907	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119042800-119072000	Weak transcription	Thymus	Thymus
2	chr3:119049200-119071200	Weak transcription	Aorta	Aorta
3	chr3:119050800-119075800	Weak transcription	Pancreas	Pancrea
4	chr3:119053200-119087200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:119053400-119087000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:119053600-119071400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:119056400-119071600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:119064400-119073200	Enhancers	Adipose Nuclei	Adipose
9	chr3:119064800-119071200	Weak transcription	Spleen	Spleen
10	chr3:119065000-119071800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:119066200-119071600	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:119066800-119073200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:119067400-119072000	Enhancers	Fetal Heart	heart
14	chr3:119067600-119072000	Enhancers	Fetal Stomach	stomach
15	chr3:119067800-119072400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:119068000-119072400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr3:119068000-119073000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:119068200-119073000	Enhancers	Left Ventricle	heart
19	chr3:119068200-119073200	Enhancers	Placenta	Placenta
20	chr3:119068400-119073200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:119068600-119071200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:119068600-119071400	Weak transcription	Brain Angular Gyrus	brain
23	chr3:119068600-119071800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr3:119068600-119072800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr3:119068600-119073000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr3:119068600-119076200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:119068800-119073200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:119069000-119071600	Weak transcription	NHLF	lung
29	chr3:119069000-119072200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr3:119069000-119072400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr3:119069000-119073000	Enhancers	Primary T cells from cord blood	blood
32	chr3:119069000-119073000	Enhancers	Lung	lung
33	chr3:119069200-119072000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:119069200-119072400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:119069200-119072800	Enhancers	H9 Cell Line	embryonic stem cell
36	chr3:119069400-119071200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr3:119069400-119072200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr3:119069400-119072400	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr3:119069400-119072800	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr3:119069400-119073200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr3:119069400-119073200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:119069400-119111400	Weak transcription	Fetal Intestine Small	intestine
43	chr3:119069600-119071600	Weak transcription	HSMMtube	muscle
44	chr3:119069600-119071600	Weak transcription	NHDF-Ad	bronchial
45	chr3:119069600-119072000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:119069600-119072400	Enhancers	HUVEC	blood vessel
47	chr3:119069600-119072600	Enhancers	Primary B cells from peripheral blood	blood
48	chr3:119069600-119073200	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr3:119069800-119071600	Enhancers	Small Intestine	intestine
50	chr3:119070000-119072200	Enhancers	HUES6 Cell Line	embryonic stem cell

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