Variant report

Variant	rs7614907
Chromosome Location	chr3:119076489-119076490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119069869..119072577-chr3:119075688..119077407,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10511383	1.00[ASN][1000 genomes]
rs11921352	1.00[ASN][1000 genomes]
rs12486197	0.87[AMR][1000 genomes]
rs12487934	1.00[ASN][1000 genomes]
rs12493956	1.00[ASN][1000 genomes]
rs16829569	1.00[ASN][1000 genomes]
rs16829641	0.89[MEX][hapmap]
rs17203062	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4284973	1.00[ASN][1000 genomes]
rs4422292	1.00[ASN][1000 genomes]
rs4568125	1.00[ASN][1000 genomes]
rs56138714	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6776910	1.00[ASN][1000 genomes]
rs6784208	1.00[ASN][1000 genomes]
rs7428178	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119053200-119087200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:119053400-119087000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:119069400-119111400	Weak transcription	Fetal Intestine Small	intestine
4	chr3:119071400-119078400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:119071600-119087000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:119072000-119078400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:119072000-119085600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr3:119072000-119086800	Weak transcription	HSMMtube	muscle
9	chr3:119072000-119109200	Weak transcription	Brain Substantia Nigra	brain
10	chr3:119072000-119133800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:119072200-119079200	Weak transcription	Brain Angular Gyrus	brain
12	chr3:119072200-119086000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr3:119072200-119087000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:119072200-119099200	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:119072200-119100600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:119072200-119101400	Weak transcription	HSMM	muscle
17	chr3:119072200-119109600	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:119072200-119114200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:119072600-119077800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:119072600-119084200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:119072600-119085800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr3:119072800-119078400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:119073000-119078000	Weak transcription	Lung	lung
24	chr3:119073000-119078200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:119073000-119078400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:119073000-119078400	Weak transcription	Fetal Stomach	stomach
27	chr3:119073000-119078600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr3:119073000-119086800	Weak transcription	Primary T cells from cord blood	blood
29	chr3:119073000-119098000	Weak transcription	Thymus	Thymus
30	chr3:119073000-119101000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr3:119073200-119078400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:119073200-119078400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:119073200-119086000	Weak transcription	Fetal Thymus	thymus
34	chr3:119074200-119078400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:119074400-119085000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:119075600-119076600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:119075600-119077400	Enhancers	Fetal Heart	heart
38	chr3:119075800-119076600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr3:119076000-119076600	Active TSS	Duodenum Mucosa	Duodenum
40	chr3:119076000-119076600	Enhancers	Fetal Lung	lung
41	chr3:119076000-119076800	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr3:119076000-119076800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:119076000-119076800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:119076200-119076600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:119076200-119077600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr3:119076200-119078400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr3:119076200-119078400	Weak transcription	Fetal Kidney	kidney
48	chr3:119076200-119078600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr3:119076200-119084000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr3:119076400-119076600	Active TSS	GM12878-XiMat	blood

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