The 2.0 version of rSNPBase

Variant report

Variant rs56142547
Chromosome Location chr14:105966605-105966606
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr14:105957800-105971800 ZNF genes & repeats iPS DF 19.11 Cell Line embryonic stem cell
2 chr14:105958000-105968600 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr14:105958200-105969200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
4 chr14:105958400-105968600 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr14:105958400-105973800 Weak transcription Primary T cells from cord blood blood
6 chr14:105958600-105967000 Weak transcription H1 Cell Line embryonic stem cell
7 chr14:105958600-105967800 Weak transcription Stomach Mucosa stomach
8 chr14:105958800-105967200 Weak transcription Primary T regulatory cells fromperipheralblood blood
9 chr14:105958800-105967800 Weak transcription iPS-15b Cell Line embryonic stem cell
10 chr14:105958800-105968000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr14:105958800-105968600 Weak transcription Primary monocytes fromperipheralblood blood
12 chr14:105959000-105967200 Weak transcription Pancreas Pancrea
13 chr14:105959400-105967200 Weak transcription Duodenum Mucosa Duodenum
14 chr14:105959400-105967200 Weak transcription Stomach Smooth Muscle stomach
15 chr14:105960000-105970800 Weak transcription Fetal Brain Female brain
16 chr14:105960200-105967000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr14:105962200-105966800 Weak transcription Esophagus oesophagus
18 chr14:105962400-105967400 Enhancers Breast Myoepithelial Primary Cells Breast
19 chr14:105963400-105966800 Strong transcription Thymus Thymus
20 chr14:105963400-105967200 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr14:105963600-105967000 Enhancers Placenta Placenta
22 chr14:105964000-105967000 Enhancers Brain Cingulate Gyrus brain
23 chr14:105964000-105967200 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr14:105964600-105966800 Enhancers Brain Angular Gyrus brain
25 chr14:105964600-105966800 Enhancers Brain Anterior Caudate brain
26 chr14:105964600-105967000 Enhancers Brain Hippocampus Middle brain
27 chr14:105964800-105967000 Enhancers HMEC breast
28 chr14:105964800-105970600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr14:105965000-105967000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
30 chr14:105965000-105967000 Flanking Active TSS HepG2 liver
31 chr14:105965000-105967200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr14:105965000-105967400 Weak transcription Fetal Intestine Large intestine
33 chr14:105965000-105968400 Weak transcription Monocytes-CD14+_RO01746 blood
34 chr14:105965000-105968800 Weak transcription NHLF lung
35 chr14:105965200-105966800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr14:105965200-105967800 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr14:105965200-105968200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr14:105965400-105967200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr14:105965400-105967400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
40 chr14:105965400-105968800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr14:105965400-105968800 Weak transcription Lung lung
42 chr14:105965600-105966800 Enhancers NHEK skin
43 chr14:105965600-105967200 Weak transcription Liver Liver
44 chr14:105965600-105967200 Enhancers Brain Substantia Nigra brain
45 chr14:105965600-105967400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr14:105965600-105967600 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr14:105965600-105968200 Weak transcription Colonic Mucosa Colon
48 chr14:105965600-105969000 Weak transcription Placenta Amnion Placenta Amnion
49 chr14:105965600-105969600 Weak transcription Adipose Nuclei Adipose
50 chr14:105965600-105970000 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015