Variant report

Variant	rs28402171
Chromosome Location	chr14:105976554-105976555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105970442..105972262-chr14:105975317..105977252,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10133083	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10136015	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10139300	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10139744	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10147392	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10151805	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10152050	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11622603	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11624007	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11628497	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12100587	0.84[ASN][1000 genomes]
rs12101234	0.82[ASN][1000 genomes]
rs12717698	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12893999	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13379293	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28431397	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28620005	0.84[ASN][1000 genomes]
rs28662250	0.85[EUR][1000 genomes]
rs28719751	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28733392	0.84[EUR][1000 genomes]
rs34564731	0.88[EUR][1000 genomes]
rs35240373	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35471125	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35511437	0.89[EUR][1000 genomes]
rs35590487	0.87[EUR][1000 genomes]
rs35592422	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35723046	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35921705	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4074453	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4074937	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4075104	0.86[EUR][1000 genomes]
rs4075105	0.86[EUR][1000 genomes]
rs55958808	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56057552	0.86[ASN][1000 genomes]
rs56142547	0.90[ASN][1000 genomes]
rs58087925	0.94[EUR][1000 genomes]
rs66710832	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7141834	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7160747	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72713322	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72713323	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73373742	0.83[ASN][1000 genomes]
rs8003942	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8004007	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8005568	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8013055	0.86[EUR][1000 genomes]
rs8013827	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8014713	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8014913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021330	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105974800-105978000	Weak transcription	Right Atrium	heart
2	chr14:105975000-105978000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links