Variant report

Variant	rs7160747
Chromosome Location	chr14:105983740-105983741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105957138..105959711-chr14:105982814..105985424,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185347	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10133083	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10136015	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10139300	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10139744	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10142224	0.89[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs10143553	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs10147392	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10151805	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10152050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622603	0.89[EUR][1000 genomes]
rs11624007	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11628497	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12717698	0.96[EUR][1000 genomes]
rs12893999	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13379293	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28402171	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28431397	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28529526	0.82[ASN][1000 genomes]
rs28662250	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28719751	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28733392	0.88[EUR][1000 genomes]
rs34564731	0.87[EUR][1000 genomes]
rs35240373	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35471125	0.89[EUR][1000 genomes]
rs35511437	0.87[EUR][1000 genomes]
rs35590487	1.00[CEU][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs35592422	0.89[EUR][1000 genomes]
rs35723046	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35921705	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4074453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4074937	0.89[EUR][1000 genomes]
rs4075104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4075105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55958808	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58087925	0.95[EUR][1000 genomes]
rs6576111	0.82[ASN][1000 genomes]
rs66710832	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7141834	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72713322	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72713323	0.89[EUR][1000 genomes]
rs73373734	0.82[ASN][1000 genomes]
rs7493501	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs8003942	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8004007	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8005568	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8013055	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs8013827	0.95[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8014713	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8014913	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8021330	0.92[GIH][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105983400-105983800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:105983400-105983800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:105983400-105984000	Enhancers	HMEC	breast
4	chr14:105983600-105983800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

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