Variant report

Variant	rs28662250
Chromosome Location	chr14:105996341-105996342
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:105962853..105964818-chr14:105995187..105997455,2	K562	blood:
2	chr14:105936567..105939705-chr14:105994343..105996511,3	MCF-7	breast:
3	chr14:105830942..105834686-chr14:105992333..105996584,4	K562	blood:
4	chr14:105950525..105959761-chr14:105989345..105997494,25	MCF-7	breast:
5	chr14:105863801..105867135-chr14:105995391..105998234,3	K562	blood:
6	chr14:105931323..105933742-chr14:105993820..105997139,3	MCF-7	breast:
7	chr14:105944424..105949494-chr14:105991782..105997266,9	MCF-7	breast:
8	chr14:105950410..105961012-chr14:105989009..105997120,20	MCF-7	breast:
9	chr14:105995043..105996961-chr14:105997844..106000357,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000226174	Chromatin interaction
ENSG00000257341	Chromatin interaction
ENSG00000182809	Chromatin interaction
ENSG00000179364	Chromatin interaction
ENSG00000257270	Chromatin interaction
ENSG00000185347	Chromatin interaction
ENSG00000213145	Chromatin interaction
ENSG00000182979	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10133083	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10136015	0.85[EUR][1000 genomes]
rs10139300	0.85[EUR][1000 genomes]
rs10139744	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10142224	0.91[ASN][1000 genomes]
rs10143553	0.91[ASN][1000 genomes]
rs10147392	0.86[EUR][1000 genomes]
rs10151805	0.85[EUR][1000 genomes]
rs10152050	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11624007	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11628497	0.85[EUR][1000 genomes]
rs12717698	0.85[EUR][1000 genomes]
rs12893999	0.85[EUR][1000 genomes]
rs13379293	0.86[EUR][1000 genomes]
rs28402171	0.85[EUR][1000 genomes]
rs28431397	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28529526	0.91[ASN][1000 genomes]
rs28733392	0.98[EUR][1000 genomes]
rs35590487	0.95[EUR][1000 genomes]
rs35592422	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35723046	0.81[EUR][1000 genomes]
rs4074453	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074937	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4075104	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4075105	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55958808	0.85[EUR][1000 genomes]
rs58087925	0.85[EUR][1000 genomes]
rs6576111	0.91[ASN][1000 genomes]
rs66710832	0.81[EUR][1000 genomes]
rs7141834	0.85[EUR][1000 genomes]
rs7160093	0.86[ASN][1000 genomes]
rs7160747	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73373734	0.91[ASN][1000 genomes]
rs7493501	0.91[ASN][1000 genomes]
rs8003942	0.84[EUR][1000 genomes]
rs8004007	0.85[EUR][1000 genomes]
rs8005568	0.84[EUR][1000 genomes]
rs8013055	0.95[EUR][1000 genomes]
rs8014713	0.86[EUR][1000 genomes]
rs8014913	0.86[EUR][1000 genomes]
rs8021330	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105992400-105996800	Enhancers	Fetal Brain Male	brain
2	chr14:105993200-105996600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:105994000-105999400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:105994200-105996600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
5	chr14:105994400-105997000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:105994800-105996800	Bivalent Enhancer	Stomach Mucosa	stomach
7	chr14:105994800-105997000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:105994800-105998800	Weak transcription	HSMMtube	muscle
9	chr14:105994800-105999000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:105994800-106001400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:105995000-105996600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr14:105995200-105996600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr14:105995200-105996800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr14:105995200-105997400	Enhancers	HepG2	liver
15	chr14:105995200-105998800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:105995400-105997600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:105995400-106004200	Weak transcription	Brain Substantia Nigra	brain
18	chr14:105995600-105996400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:105995600-105996400	Bivalent Enhancer	Placenta	Placenta
20	chr14:105995600-105996800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:105995600-105997000	Enhancers	Ovary	ovary
22	chr14:105995600-105998800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:105995600-105999000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:105995800-105996400	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr14:105995800-105996400	Weak transcription	Brain Germinal Matrix	brain
26	chr14:105995800-105996600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr14:105995800-105996800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:105995800-105996800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr14:105995800-105996800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:105995800-105996800	Weak transcription	Brain Anterior Caudate	brain
31	chr14:105995800-105997400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:105996000-105996400	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr14:105996000-105996400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr14:105996000-105996400	Weak transcription	Liver	Liver
35	chr14:105996000-105996400	Weak transcription	Fetal Brain Female	brain
36	chr14:105996000-105996400	Bivalent Enhancer	Fetal Intestine Small	intestine
37	chr14:105996000-105996400	Enhancers	Lung	lung
38	chr14:105996000-105996400	Enhancers	Stomach Smooth Muscle	stomach
39	chr14:105996000-105996600	Enhancers	GM12878-XiMat	blood
40	chr14:105996000-105996600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
41	chr14:105996000-105996800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr14:105996000-105996800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr14:105996000-105996800	Bivalent Enhancer	Fetal Muscle Leg	muscle
44	chr14:105996000-105997000	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr14:105996000-105997000	Enhancers	Fetal Lung	lung
46	chr14:105996000-105997200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
47	chr14:105996000-105997200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr14:105996000-105997200	Enhancers	Gastric	stomach
49	chr14:105996000-105997600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
50	chr14:105996000-105998800	Weak transcription	Brain Angular Gyrus	brain

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