Variant report

Variant	rs8013055
Chromosome Location	chr14:105990620-105990621
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:105835985..105837885-chr14:105989782..105992568,2	MCF-7	breast:
2	chr14:105950525..105959761-chr14:105989345..105997494,25	MCF-7	breast:
3	chr14:105950410..105961012-chr14:105989009..105997120,20	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185347	Chromatin interaction
ENSG00000213145	Chromatin interaction
ENSG00000257341	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10133083	0.85[EUR][1000 genomes]
rs10136015	0.86[EUR][1000 genomes]
rs10139300	0.85[EUR][1000 genomes]
rs10139744	0.86[EUR][1000 genomes]
rs10147392	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10151805	0.85[EUR][1000 genomes]
rs10152050	0.89[EUR][1000 genomes]
rs11624007	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11628497	0.85[EUR][1000 genomes]
rs12717698	0.85[EUR][1000 genomes]
rs12893999	0.85[EUR][1000 genomes]
rs13379293	0.86[EUR][1000 genomes]
rs28402171	0.86[EUR][1000 genomes]
rs28431397	0.86[EUR][1000 genomes]
rs28662250	0.95[EUR][1000 genomes]
rs28733392	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34564731	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35240373	0.80[EUR][1000 genomes]
rs35471125	0.80[EUR][1000 genomes]
rs35511437	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35590487	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35592422	0.96[EUR][1000 genomes]
rs35723046	0.81[EUR][1000 genomes]
rs35921705	0.80[EUR][1000 genomes]
rs4074453	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4074937	0.96[EUR][1000 genomes]
rs4075104	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4075105	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs55958808	0.86[EUR][1000 genomes]
rs58087925	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66710832	0.81[EUR][1000 genomes]
rs7141834	0.85[EUR][1000 genomes]
rs7160747	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs72713323	0.80[EUR][1000 genomes]
rs8003942	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs8004007	0.85[EUR][1000 genomes]
rs8005568	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs8013827	0.95[CEU][hapmap]
rs8014713	0.86[EUR][1000 genomes]
rs8014913	0.86[EUR][1000 genomes]
rs8021330	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8013055	C14orf80	cis	multi-tissue	Pritchard
rs8013055	TMEM121	cis	multi-tissue	Pritchard

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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