Variant report

Variant	rs56162505
Chromosome Location	chr1:172991676-172991677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10798254	1.00[AFR][1000 genomes]
rs12122161	1.00[ASN][1000 genomes]
rs12142955	1.00[ASN][1000 genomes]
rs12143054	1.00[ASN][1000 genomes]
rs12143056	1.00[ASN][1000 genomes]
rs61826262	1.00[ASN][1000 genomes]
rs61828382	1.00[ASN][1000 genomes]
rs61828384	1.00[ASN][1000 genomes]
rs6684112	1.00[ASN][1000 genomes]
rs972100	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172990800-172992600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr1:172990800-172994800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr1:172991400-172993000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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