Variant report

Variant	rs61826262
Chromosome Location	chr1:172922947-172922948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12122161	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12142955	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12143054	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12143056	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4916194	1.00[ASN][1000 genomes]
rs56162505	1.00[ASN][1000 genomes]
rs61828382	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61828384	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6684112	1.00[ASN][1000 genomes]
rs972100	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172915200-172924600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:172918000-172923000	Weak transcription	HSMMtube	muscle
3	chr1:172918000-172929000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:172918600-172924200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:172919000-172923000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:172921200-172925600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:172921400-172924200	Weak transcription	Osteobl	bone
8	chr1:172921400-172924400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:172921400-172927200	Enhancers	HUVEC	blood vessel
10	chr1:172921600-172923200	Weak transcription	NHDF-Ad	bronchial
11	chr1:172921600-172923400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:172921600-172923600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:172921600-172923600	Weak transcription	HSMM	muscle
14	chr1:172921600-172923800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:172921600-172924800	Weak transcription	Fetal Stomach	stomach
16	chr1:172921600-172929600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:172921800-172923600	Weak transcription	NHLF	lung
18	chr1:172921800-172923800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:172921800-172924000	Weak transcription	NHEK	skin
20	chr1:172921800-172924400	Weak transcription	HMEC	breast
21	chr1:172922200-172924400	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links