Variant report

Variant	rs61828382
Chromosome Location	chr1:172848496-172848497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10798176	1.00[ASN][1000 genomes]
rs10798178	1.00[ASN][1000 genomes]
rs10912265	1.00[ASN][1000 genomes]
rs10912267	1.00[ASN][1000 genomes]
rs10912276	1.00[ASN][1000 genomes]
rs10912280	1.00[ASN][1000 genomes]
rs10912292	1.00[ASN][1000 genomes]
rs10912295	1.00[ASN][1000 genomes]
rs10912301	1.00[ASN][1000 genomes]
rs11801183	0.86[EUR][1000 genomes]
rs12068671	1.00[ASN][1000 genomes]
rs12117954	1.00[ASN][1000 genomes]
rs12118303	1.00[ASN][1000 genomes]
rs12122161	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122581	1.00[ASN][1000 genomes]
rs12131049	0.82[EUR][1000 genomes]
rs12142280	0.86[EUR][1000 genomes]
rs12142561	1.00[ASN][1000 genomes]
rs12142955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143213	1.00[ASN][1000 genomes]
rs2131376	1.00[ASN][1000 genomes]
rs2157477	1.00[ASN][1000 genomes]
rs2220728	1.00[ASN][1000 genomes]
rs2901677	1.00[ASN][1000 genomes]
rs41309790	1.00[ASN][1000 genomes]
rs4916194	1.00[ASN][1000 genomes]
rs5030772	1.00[ASN][1000 genomes]
rs56109488	1.00[ASN][1000 genomes]
rs56162505	1.00[ASN][1000 genomes]
rs59411853	1.00[ASN][1000 genomes]
rs59871679	1.00[ASN][1000 genomes]
rs61826262	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61828384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684112	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553067	1.00[ASN][1000 genomes]
rs972100	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172840600-172855200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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