The 2.0 version of rSNPBase

Variant report

Variant rs41309790
Chromosome Location chr1:172627864-172627865
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:29 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172623600-172628000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr1:172624000-172631800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:172624200-172640600 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr1:172624400-172631600 Weak transcription NHEK skin
5 chr1:172624400-172631800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
6 chr1:172624600-172631600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:172625000-172630200 Weak transcription HMEC breast
8 chr1:172626600-172628000 Enhancers Primary T killer naive cells fromperipheralblood blood
9 chr1:172626800-172628000 Enhancers Primary T cells fromperipheralblood blood
10 chr1:172626800-172628000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
11 chr1:172626800-172628200 Enhancers Primary T killer memory cells from peripheral blood blood
12 chr1:172626800-172632800 Enhancers Primary T helper naive cells fromperipheralblood blood
13 chr1:172627000-172628200 Weak transcription Left Ventricle heart
14 chr1:172627200-172628000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
15 chr1:172627200-172628000 Enhancers Primary T helper cells fromperipheralblood blood
16 chr1:172627200-172628000 Enhancers Primary T regulatory cells fromperipheralblood blood
17 chr1:172627200-172631800 Enhancers Primary T cells from cord blood blood
18 chr1:172627400-172628000 Enhancers Primary T helper naive cells from peripheral blood blood
19 chr1:172627400-172632400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:172627600-172628000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
21 chr1:172627600-172628400 Enhancers K562 blood
22 chr1:172627600-172628800 Enhancers Fetal Thymus thymus
23 chr1:172627800-172628000 Enhancers Primary mononuclear cells fromperipheralblood Blood
24 chr1:172627800-172628400 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
25 chr1:172627800-172628400 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
26 chr1:172627800-172628400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:172627800-172628400 Enhancers Fetal Adrenal Gland Adrenal Gland
28 chr1:172627800-172628800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr1:172627800-172631800 Flanking Active TSS Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015