Variant report

Variant	rs2227190
Chromosome Location	chr1:172600176-172600177
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172592662..172594714-chr1:172598383..172600821,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1053381	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798176	1.00[ASN][1000 genomes]
rs10798178	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10912265	1.00[ASN][1000 genomes]
rs10912267	1.00[ASN][1000 genomes]
rs10912276	1.00[ASN][1000 genomes]
rs10912280	1.00[ASN][1000 genomes]
rs10912292	1.00[ASN][1000 genomes]
rs10912295	1.00[ASN][1000 genomes]
rs10912301	1.00[ASN][1000 genomes]
rs12065670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12068671	1.00[ASN][1000 genomes]
rs12117954	1.00[ASN][1000 genomes]
rs12118303	1.00[ASN][1000 genomes]
rs12122581	1.00[ASN][1000 genomes]
rs12142561	1.00[ASN][1000 genomes]
rs12143213	1.00[ASN][1000 genomes]
rs1557561	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17279308	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2131376	1.00[ASN][1000 genomes]
rs2157477	1.00[ASN][1000 genomes]
rs2220728	1.00[ASN][1000 genomes]
rs2901677	1.00[ASN][1000 genomes]
rs41264544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41264546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41309790	1.00[ASN][1000 genomes]
rs4916194	1.00[ASN][1000 genomes]
rs5030772	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs56109488	1.00[ASN][1000 genomes]
rs59411853	1.00[ASN][1000 genomes]
rs59871679	1.00[ASN][1000 genomes]
rs73036127	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74124209	1.00[ASN][1000 genomes]
rs7519616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553067	1.00[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172596000-172600400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:172596200-172600800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:172597200-172605800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:172597400-172600600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:172597600-172605200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:172597800-172600400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:172598000-172600200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:172598000-172601000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:172598200-172600200	Weak transcription	Dnd41	blood
10	chr1:172598200-172605400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:172598600-172600200	Enhancers	NHEK	skin
12	chr1:172598600-172600400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:172598600-172601000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr1:172598800-172600200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:172598800-172600400	Enhancers	HMEC	breast
16	chr1:172598800-172600600	Enhancers	HepG2	liver
17	chr1:172598800-172600800	Enhancers	Hela-S3	cervix
18	chr1:172598800-172605800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr1:172599000-172600200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:172599000-172600400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:172599000-172600400	Enhancers	NH-A	brain
22	chr1:172599000-172600400	Enhancers	Osteobl	bone
23	chr1:172599000-172601000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:172599000-172605600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr1:172599200-172600200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr1:172599200-172601000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:172599200-172601200	Weak transcription	Primary T cells from cord blood	blood
28	chr1:172599400-172600200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr1:172599600-172600200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:172599600-172600400	Enhancers	HSMM	muscle
31	chr1:172599600-172601000	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr1:172599800-172600400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr1:172600000-172600800	Enhancers	A549	lung

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