The 2.0 version of rSNPBase

Variant report

Variant rs41264544
Chromosome Location chr1:172548301-172548302
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172511800-172557800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr1:172514200-172558800 Weak transcription Small Intestine intestine
3 chr1:172516800-172550200 Weak transcription Fetal Heart heart
4 chr1:172519200-172559000 Weak transcription Psoas Muscle Psoas
5 chr1:172519400-172571600 Weak transcription Brain Angular Gyrus brain
6 chr1:172521800-172560400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
7 chr1:172527000-172558000 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr1:172527800-172550400 Weak transcription Stomach Mucosa stomach
9 chr1:172527800-172554600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr1:172534800-172558000 Weak transcription Stomach Smooth Muscle stomach
11 chr1:172535200-172558000 Weak transcription HSMMtube muscle
12 chr1:172535400-172554200 Weak transcription NHEK skin
13 chr1:172535400-172558000 Weak transcription Left Ventricle heart
14 chr1:172535400-172558000 Weak transcription Right Ventricle heart
15 chr1:172535400-172558200 Weak transcription Brain Substantia Nigra brain
16 chr1:172535600-172558000 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr1:172535600-172569200 Weak transcription Gastric stomach
18 chr1:172536000-172558000 Weak transcription Fetal Stomach stomach
19 chr1:172536000-172565400 Weak transcription Ovary ovary
20 chr1:172536000-172565600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:172536000-172566000 Weak transcription Aorta Aorta
22 chr1:172537400-172565600 Weak transcription Lung lung
23 chr1:172539800-172550800 Weak transcription ES-WA7 Cell Line embryonic stem cell
24 chr1:172540200-172550800 Weak transcription Pancreatic Islets Pancreatic Islet
25 chr1:172540200-172557400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr1:172540200-172558000 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr1:172540200-172581000 Weak transcription Colonic Mucosa Colon
28 chr1:172540400-172548600 Weak transcription Adipose Nuclei Adipose
29 chr1:172540400-172550200 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr1:172540400-172550400 Weak transcription NHLF lung
31 chr1:172540400-172554200 Weak transcription HMEC breast
32 chr1:172540400-172555000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:172540400-172557000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:172540400-172557800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr1:172540400-172557800 Weak transcription Primary T cells from cord blood blood
36 chr1:172540400-172557800 Weak transcription Brain Inferior Temporal Lobe brain
37 chr1:172540400-172557800 Weak transcription Thymus Thymus
38 chr1:172540400-172557800 Weak transcription GM12878-XiMat blood
39 chr1:172540400-172558000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:172540400-172558000 Weak transcription Primary T helper naive cells from peripheral blood blood
41 chr1:172540400-172558000 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr1:172540400-172558000 Weak transcription Brain Hippocampus Middle brain
43 chr1:172540400-172558000 Weak transcription Fetal Brain Female brain
44 chr1:172540400-172558000 Weak transcription Fetal Kidney kidney
45 chr1:172540400-172558000 Weak transcription Fetal Muscle Leg muscle
46 chr1:172540400-172558200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr1:172540400-172558400 Weak transcription Brain Cingulate Gyrus brain
48 chr1:172540400-172559600 Weak transcription H9 Cell Line embryonic stem cell
49 chr1:172540400-172565600 Weak transcription Esophagus oesophagus
50 chr1:172540400-172565800 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015