The 2.0 version of rSNPBase

Variant report

Variant rs1053381
Chromosome Location chr1:172580537-172580538
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172540200-172581000 Weak transcription Colonic Mucosa Colon
2 chr1:172557400-172581200 Weak transcription Fetal Heart heart
3 chr1:172559000-172583400 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr1:172560000-172580600 Weak transcription Small Intestine intestine
5 chr1:172560000-172581200 Weak transcription Psoas Muscle Psoas
6 chr1:172560000-172582400 Weak transcription Brain Substantia Nigra brain
7 chr1:172560200-172581800 Weak transcription Hela-S3 cervix
8 chr1:172563800-172581200 Strong transcription Primary B cells from cord blood blood
9 chr1:172563800-172582000 Strong transcription Monocytes-CD14+_RO01746 blood
10 chr1:172564400-172581000 Strong transcription Primary neutrophils fromperipheralblood blood
11 chr1:172564400-172582000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:172566000-172581200 Strong transcription Primary monocytes fromperipheralblood blood
13 chr1:172566600-172581000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:172566600-172581000 Weak transcription H9 Cell Line embryonic stem cell
15 chr1:172566600-172581200 Weak transcription Fetal Stomach stomach
16 chr1:172566600-172581800 Weak transcription Esophagus oesophagus
17 chr1:172566600-172582200 Weak transcription Fetal Intestine Small intestine
18 chr1:172566600-172595800 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr1:172567000-172580600 Weak transcription Right Ventricle heart
20 chr1:172567000-172580800 Weak transcription Ovary ovary
21 chr1:172567200-172581400 Weak transcription A549 lung
22 chr1:172567400-172582200 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr1:172569600-172580800 Weak transcription NHDF-Ad bronchial
24 chr1:172570600-172580800 Weak transcription Rectal Smooth Muscle rectum
25 chr1:172570600-172581200 Weak transcription Lung lung
26 chr1:172570600-172581400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr1:172570600-172584000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr1:172570600-172585400 Weak transcription Aorta Aorta
29 chr1:172572200-172580800 Weak transcription Thymus Thymus
30 chr1:172573200-172581400 Weak transcription Primary T killer naive cells fromperipheralblood blood
31 chr1:172573400-172582400 Weak transcription Stomach Smooth Muscle stomach
32 chr1:172574400-172581000 Weak transcription Brain Inferior Temporal Lobe brain
33 chr1:172574400-172582000 Weak transcription Brain Germinal Matrix brain
34 chr1:172576800-172581200 Weak transcription HMEC breast
35 chr1:172576800-172585400 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr1:172577200-172581000 Strong transcription Primary T cells from cord blood blood
37 chr1:172577200-172581000 Strong transcription Primary hematopoietic stem cells blood
38 chr1:172577400-172580800 Strong transcription HUES48 Cell Line embryonic stem cell
39 chr1:172577400-172580800 Strong transcription Primary T helper naive cells fromperipheralblood blood
40 chr1:172577400-172581000 Strong transcription HUES64 Cell Line embryonic stem cell
41 chr1:172577400-172581600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:172577400-172582000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr1:172577600-172581000 Strong transcription Breast Myoepithelial Primary Cells Breast
44 chr1:172577600-172581000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr1:172577800-172580800 Strong transcription Placenta Placenta
46 chr1:172577800-172581200 Strong transcription Primary T helper cells PMA-I stimulated --
47 chr1:172578000-172580800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr1:172578000-172580800 Strong transcription Adipose Nuclei Adipose
49 chr1:172578000-172581000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr1:172578000-172581000 Strong transcription Placenta Amnion Placenta Amnion

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Last update: Aug 31, 2015