The 2.0 version of rSNPBase

Variant report

Variant rs17279308
Chromosome Location chr1:172611596-172611597
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172607000-172612000 Weak transcription Esophagus oesophagus
2 chr1:172608600-172612400 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr1:172608800-172611600 Weak transcription HepG2 liver
4 chr1:172608800-172612000 Weak transcription Left Ventricle heart
5 chr1:172608800-172614000 Enhancers Primary T cells fromperipheralblood blood
6 chr1:172608800-172614400 Enhancers Primary T killer memory cells from peripheral blood blood
7 chr1:172608800-172615000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
8 chr1:172608800-172624000 Weak transcription ES-I3 Cell Line embryonic stem cell
9 chr1:172609000-172611600 Weak transcription A549 lung
10 chr1:172609000-172612000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:172609000-172612000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr1:172609000-172612200 Weak transcription Primary B cells from peripheral blood blood
13 chr1:172609000-172612600 Enhancers Primary T helper naive cells fromperipheralblood blood
14 chr1:172609000-172612800 Weak transcription Right Atrium heart
15 chr1:172609000-172614800 Enhancers Primary T cells from cord blood blood
16 chr1:172609000-172614800 Enhancers Primary T helper naive cells from peripheral blood blood
17 chr1:172609000-172614800 Enhancers Primary T helper cells fromperipheralblood blood
18 chr1:172609400-172612000 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr1:172609600-172611800 Weak transcription Osteobl bone
20 chr1:172609600-172612000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:172609600-172612000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:172609600-172612000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:172609600-172612000 Weak transcription NHLF lung
24 chr1:172609600-172612200 Weak transcription Primary monocytes fromperipheralblood blood
25 chr1:172609800-172612000 Weak transcription Dnd41 blood
26 chr1:172609800-172612000 Weak transcription HSMM muscle
27 chr1:172609800-172612200 Enhancers Primary T helper 17 cells PMA-I stimulated --
28 chr1:172609800-172616000 Weak transcription NH-A brain
29 chr1:172610000-172611600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr1:172610000-172611800 Weak transcription Primary T regulatory cells fromperipheralblood blood
31 chr1:172610000-172611800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr1:172610000-172612200 Enhancers Primary T helper cells PMA-I stimulated --
33 chr1:172610400-172612000 Weak transcription Muscle Satellite Cultured Cells --
34 chr1:172610400-172612000 Weak transcription HMEC breast
35 chr1:172610400-172612200 Weak transcription K562 blood
36 chr1:172610400-172613000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:172610600-172612000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr1:172610600-172614000 Enhancers Fetal Thymus thymus
39 chr1:172610800-172612000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:172610800-172612000 Weak transcription NHEK skin
41 chr1:172610800-172612200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr1:172611000-172611800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
43 chr1:172611200-172612000 Weak transcription Thymus Thymus
44 chr1:172611400-172612800 Enhancers Hela-S3 cervix
45 chr1:172611400-172613800 Enhancers Primary Natural Killer cells fromperipheralblood blood
46 chr1:172611400-172613800 Enhancers Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015