The 2.0 version of rSNPBase

Variant report

Variant rs41264546
Chromosome Location chr1:172558524-172558525
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172514200-172558800 Weak transcription Small Intestine intestine
2 chr1:172519200-172559000 Weak transcription Psoas Muscle Psoas
3 chr1:172519400-172571600 Weak transcription Brain Angular Gyrus brain
4 chr1:172521800-172560400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
5 chr1:172535600-172569200 Weak transcription Gastric stomach
6 chr1:172536000-172565400 Weak transcription Ovary ovary
7 chr1:172536000-172565600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:172536000-172566000 Weak transcription Aorta Aorta
9 chr1:172537400-172565600 Weak transcription Lung lung
10 chr1:172540200-172581000 Weak transcription Colonic Mucosa Colon
11 chr1:172540400-172559600 Weak transcription H9 Cell Line embryonic stem cell
12 chr1:172540400-172565600 Weak transcription Esophagus oesophagus
13 chr1:172540400-172565800 Weak transcription Pancreas Pancrea
14 chr1:172540600-172565400 Weak transcription Fetal Intestine Small intestine
15 chr1:172541600-172565400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:172542000-172559600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr1:172548400-172565600 Weak transcription Rectal Smooth Muscle rectum
18 chr1:172551400-172565200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr1:172551600-172559600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr1:172551800-172558800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
21 chr1:172554200-172562800 Strong transcription HUES64 Cell Line embryonic stem cell
22 chr1:172554600-172559000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:172554600-172560400 Strong transcription Primary neutrophils fromperipheralblood blood
24 chr1:172554600-172561400 Strong transcription HUES48 Cell Line embryonic stem cell
25 chr1:172554800-172560600 Strong transcription iPS-18 Cell Line embryonic stem cell
26 chr1:172555000-172560600 Strong transcription Primary T regulatory cells fromperipheralblood blood
27 chr1:172555200-172560400 Strong transcription Primary T helper cells PMA-I stimulated --
28 chr1:172555400-172560600 Strong transcription H1 Cell Line embryonic stem cell
29 chr1:172555800-172561400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:172556000-172560600 Strong transcription iPS-20b Cell Line embryonic stem cell
31 chr1:172556000-172565600 Weak transcription Spleen Spleen
32 chr1:172556400-172565400 Strong transcription HUES6 Cell Line embryonic stem cell
33 chr1:172557000-172558800 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr1:172557000-172559200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
35 chr1:172557000-172560000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:172557000-172560400 Strong transcription Breast Myoepithelial Primary Cells Breast
37 chr1:172557000-172560400 Strong transcription Primary B cells from cord blood blood
38 chr1:172557000-172560400 Strong transcription Primary B cells from peripheral blood blood
39 chr1:172557000-172560400 Strong transcription Primary T helper cells fromperipheralblood blood
40 chr1:172557000-172560400 Strong transcription Dnd41 blood
41 chr1:172557000-172560600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
42 chr1:172557200-172558600 Enhancers NHDF-Ad bronchial
43 chr1:172557200-172559200 Genic enhancers HSMM muscle
44 chr1:172557200-172560200 Strong transcription HepG2 liver
45 chr1:172557200-172560400 Strong transcription Rectal Mucosa Donor 31 rectum
46 chr1:172557200-172560600 Strong transcription Primary T helper naive cells fromperipheralblood blood
47 chr1:172557400-172559400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr1:172557400-172560200 Strong transcription Primary hematopoietic stem cells blood
49 chr1:172557400-172560400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr1:172557400-172560400 Strong transcription Liver Liver

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Last update: Aug 31, 2015