Variant report

Variant	rs56166009
Chromosome Location	chr1:224871569-224871570
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55838462	0.88[AFR][1000 genomes]
rs55905698	0.93[AFR][1000 genomes]
rs57436829	0.93[AFR][1000 genomes]
rs57468714	0.93[AFR][1000 genomes]
rs58923203	0.93[AFR][1000 genomes]
rs59459595	0.93[AFR][1000 genomes]
rs59656396	0.93[AFR][1000 genomes]
rs74146225	0.86[AFR][1000 genomes]
rs74146246	0.88[AFR][1000 genomes]
rs74146249	0.93[AFR][1000 genomes]
rs74146250	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224832200-224884400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:224833200-224874400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:224858400-224871800	Weak transcription	NHLF	lung
4	chr1:224858400-224874200	Weak transcription	NH-A	brain
5	chr1:224861200-224876800	Weak transcription	Ovary	ovary
6	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
7	chr1:224864000-224876200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:224864600-224871600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:224867800-224872400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:224868000-224871800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:224868000-224874000	Weak transcription	Gastric	stomach
12	chr1:224868400-224875200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:224869400-224872600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:224869800-224871800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:224869800-224871800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:224869800-224877200	Weak transcription	Dnd41	blood
17	chr1:224870200-224872600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:224870400-224872000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:224871200-224873000	Enhancers	Fetal Brain Male	brain
20	chr1:224871400-224876400	Strong transcription	NHDF-Ad	bronchial

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