Variant report

Variant	rs57436829
Chromosome Location	chr1:224884895-224884896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224883559..224885900-chr1:224887129..224888856,2	K562	blood:
2	chr1:224884331..224887289-chr1:224890034..224891821,2	MCF-7	breast:
3	chr1:224882945..224885447-chr1:224889455..224891684,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55838462	0.86[AFR][1000 genomes]
rs55905698	1.00[AFR][1000 genomes]
rs56166009	0.93[AFR][1000 genomes]
rs57468714	0.90[AFR][1000 genomes]
rs58923203	0.90[AFR][1000 genomes]
rs59459595	0.90[AFR][1000 genomes]
rs59656396	0.90[AFR][1000 genomes]
rs74146225	0.84[AFR][1000 genomes]
rs74146246	0.86[AFR][1000 genomes]
rs74146249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224862400-224902000	Weak transcription	Pancreas	Pancrea
2	chr1:224875600-224888400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:224877600-224891600	Weak transcription	Dnd41	blood
4	chr1:224881000-224885200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:224881400-224895400	Weak transcription	Ovary	ovary
6	chr1:224884000-224885800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:224884000-224885800	Enhancers	NHDF-Ad	bronchial
8	chr1:224884000-224887000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr1:224884200-224885600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:224884200-224885800	Enhancers	Fetal Brain Male	brain
11	chr1:224884200-224886200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:224884200-224886400	Enhancers	Brain Germinal Matrix	brain
13	chr1:224884200-224887400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:224884400-224885200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:224884600-224885000	Enhancers	Right Atrium	heart
16	chr1:224884600-224885400	Enhancers	Fetal Brain Female	brain
17	chr1:224884600-224885600	Enhancers	NH-A	brain
18	chr1:224884600-224885800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:224884600-224886200	Enhancers	Brain Cingulate Gyrus	brain
20	chr1:224884800-224885400	Enhancers	HSMMtube	muscle
21	chr1:224884800-224885800	Enhancers	NHLF	lung
22	chr1:224884800-224886200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:224884800-224886200	Enhancers	Brain Angular Gyrus	brain
24	chr1:224884800-224886400	Enhancers	Brain Hippocampus Middle	brain
25	chr1:224884800-224886800	Enhancers	Brain Inferior Temporal Lobe	brain

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