Variant report

Variant	rs58923203
Chromosome Location	chr1:224856569-224856570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55838462	0.95[AFR][1000 genomes]
rs55905698	0.90[AFR][1000 genomes]
rs56166009	0.93[AFR][1000 genomes]
rs57436829	0.90[AFR][1000 genomes]
rs57468714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59459595	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59656396	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146222	0.81[AFR][1000 genomes]
rs74146225	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74146246	0.95[AFR][1000 genomes]
rs74146249	0.90[AFR][1000 genomes]
rs74146250	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224832200-224884400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:224832800-224869000	Weak transcription	Dnd41	blood
3	chr1:224833200-224874400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:224840800-224856800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:224840800-224858000	Weak transcription	NH-A	brain
6	chr1:224841000-224856600	Weak transcription	Pancreas	Pancrea
7	chr1:224851400-224863000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:224853600-224857400	Enhancers	Fetal Brain Male	brain
9	chr1:224854200-224856600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:224855200-224857800	Weak transcription	NHLF	lung
11	chr1:224856200-224857000	Enhancers	Fetal Muscle Trunk	muscle
12	chr1:224856200-224857400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr1:224856200-224858600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:224856200-224858600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:224856200-224858600	Enhancers	NHDF-Ad	bronchial
16	chr1:224856400-224856800	Enhancers	Psoas Muscle	Psoas
17	chr1:224856400-224857400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr1:224856400-224857800	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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