Variant report

Variant	rs56168947
Chromosome Location	chr11:34901073-34901074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56104047	1.00[AMR][1000 genomes]
rs56105539	1.00[AMR][1000 genomes]
rs56204451	1.00[AMR][1000 genomes]
rs56254718	1.00[AMR][1000 genomes]
rs56406221	1.00[AMR][1000 genomes]
rs57951883	1.00[AMR][1000 genomes]
rs58208535	1.00[AMR][1000 genomes]
rs58295829	1.00[AMR][1000 genomes]
rs58864846	1.00[AMR][1000 genomes]
rs58907934	1.00[AMR][1000 genomes]
rs59184525	1.00[AMR][1000 genomes]
rs60295827	1.00[AMR][1000 genomes]
rs60766133	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34859000-34909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:34877600-34906400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:34882000-34919800	Weak transcription	Left Ventricle	heart
4	chr11:34886000-34903200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:34886400-34903400	Weak transcription	Primary B cells from cord blood	blood
6	chr11:34886800-34904400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:34887200-34903000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:34888000-34907600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:34888400-34903200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:34888600-34901400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:34888800-34903600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:34891200-34901600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:34891200-34907000	Weak transcription	Thymus	Thymus
14	chr11:34891200-34919200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:34891400-34907000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:34891600-34906400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:34892000-34904600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:34892600-34901400	Weak transcription	Fetal Thymus	thymus
19	chr11:34892600-34903000	Weak transcription	Primary T cells from cord blood	blood
20	chr11:34892600-34913000	Weak transcription	Brain Anterior Caudate	brain
21	chr11:34893000-34903400	Weak transcription	Fetal Lung	lung
22	chr11:34893000-34921400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:34893200-34901600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:34894400-34902000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:34894400-34903000	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:34894400-34904400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:34894600-34903000	Weak transcription	Brain Substantia Nigra	brain
28	chr11:34894600-34909600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:34894800-34901800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:34894800-34903200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:34895000-34903200	Weak transcription	Fetal Brain Female	brain
32	chr11:34895000-34912000	Weak transcription	Brain Angular Gyrus	brain
33	chr11:34895000-34921200	Weak transcription	Right Ventricle	heart
34	chr11:34895400-34912000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:34895600-34901400	Weak transcription	Ovary	ovary
36	chr11:34895800-34907000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:34896000-34901800	Weak transcription	Dnd41	blood
38	chr11:34896000-34908200	Weak transcription	Liver	Liver
39	chr11:34896000-34912200	Weak transcription	K562	blood
40	chr11:34896200-34909800	Weak transcription	Pancreas	Pancrea
41	chr11:34896600-34903200	Weak transcription	Adipose Nuclei	Adipose
42	chr11:34896600-34903200	Weak transcription	Brain Germinal Matrix	brain
43	chr11:34896600-34907200	Weak transcription	Esophagus	oesophagus
44	chr11:34896600-34911600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:34897000-34903000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:34897000-34913000	Weak transcription	Lung	lung
47	chr11:34897000-34919200	Weak transcription	Fetal Stomach	stomach
48	chr11:34897200-34907200	Weak transcription	Aorta	Aorta
49	chr11:34897200-34907400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr11:34897400-34903200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links