Variant report

Variant	rs56406221
Chromosome Location	chr11:34806265-34806266
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56104047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56105539	1.00[AMR][1000 genomes]
rs56168947	1.00[AMR][1000 genomes]
rs56202470	0.89[AFR][1000 genomes]
rs56204451	1.00[AMR][1000 genomes]
rs56254718	1.00[AMR][1000 genomes]
rs57951883	1.00[AMR][1000 genomes]
rs58208535	1.00[AMR][1000 genomes]
rs58295829	1.00[AMR][1000 genomes]
rs58545188	1.00[AMR][1000 genomes]
rs58864846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58907934	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59184525	1.00[AMR][1000 genomes]
rs60295827	1.00[AMR][1000 genomes]
rs60766133	1.00[AMR][1000 genomes]
rs61321894	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv897214	chr11:34764251-34821948	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34792200-34811000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:34802800-34811200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:34804000-34811000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:34804800-34806600	Flanking Active TSS	HepG2	liver
5	chr11:34805000-34806400	Enhancers	Stomach Mucosa	stomach
6	chr11:34805800-34812800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:34806000-34814000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:34806200-34806400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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