Variant report

Variant	rs57951883
Chromosome Location	chr11:34893117-34893118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34891442..34894035-chr11:34912560..34915333,2	K562	blood:
2	chr11:34891300..34893978-chr11:34898665..34900460,2	K562	blood:
3	chr11:34892033..34893587-chr11:34896455..34898102,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56104047	1.00[AMR][1000 genomes]
rs56105539	1.00[AMR][1000 genomes]
rs56168947	1.00[AMR][1000 genomes]
rs56204451	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56254718	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56406221	1.00[AMR][1000 genomes]
rs58208535	1.00[AMR][1000 genomes]
rs58295829	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58545188	1.00[AMR][1000 genomes]
rs58864846	1.00[AMR][1000 genomes]
rs58907934	1.00[AMR][1000 genomes]
rs59184525	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60295827	1.00[AMR][1000 genomes]
rs60766133	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34859000-34909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:34876600-34896000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:34877600-34906400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:34880200-34898000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:34882000-34919800	Weak transcription	Left Ventricle	heart
6	chr11:34885000-34896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:34886000-34903200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:34886400-34903400	Weak transcription	Primary B cells from cord blood	blood
9	chr11:34886600-34896000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:34886800-34904400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:34887200-34903000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:34887400-34895800	Weak transcription	Aorta	Aorta
13	chr11:34888000-34907600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:34888200-34896600	Weak transcription	Lung	lung
15	chr11:34888400-34896400	Weak transcription	Adipose Nuclei	Adipose
16	chr11:34888400-34903200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:34888600-34901400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:34888800-34903600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:34891200-34901600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:34891200-34907000	Weak transcription	Thymus	Thymus
21	chr11:34891200-34919200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:34891400-34895800	Weak transcription	Esophagus	oesophagus
23	chr11:34891400-34907000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:34891600-34896400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:34891600-34906400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr11:34891800-34896400	Weak transcription	Brain Germinal Matrix	brain
27	chr11:34892000-34893200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr11:34892000-34904600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:34892400-34896400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:34892600-34901400	Weak transcription	Fetal Thymus	thymus
31	chr11:34892600-34903000	Weak transcription	Primary T cells from cord blood	blood
32	chr11:34892600-34913000	Weak transcription	Brain Anterior Caudate	brain
33	chr11:34892800-34895800	Weak transcription	Fetal Stomach	stomach
34	chr11:34892800-34899400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:34893000-34903400	Weak transcription	Fetal Lung	lung
36	chr11:34893000-34921400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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