Variant report

Variant	rs56171881
Chromosome Location	chr8:68285893-68285894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68254722..68259886-chr8:68284199..68288468,7	MCF-7	breast:
2	chr8:68284589..68286454-chr8:68290300..68292176,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066777	Chromatin interaction
ENSG00000271966	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11987016	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11991868	1.00[AMR][1000 genomes]
rs11996976	1.00[AMR][1000 genomes]
rs16933261	1.00[AMR][1000 genomes]
rs55890263	1.00[AMR][1000 genomes]
rs56115531	1.00[AMR][1000 genomes]
rs56322915	1.00[AMR][1000 genomes]
rs56675350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60435775	1.00[AMR][1000 genomes]
rs6987385	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691320	1.00[AMR][1000 genomes]
rs73691326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691328	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693157	1.00[AMR][1000 genomes]
rs73693186	1.00[AMR][1000 genomes]
rs7815839	1.00[AMR][1000 genomes]
rs7820540	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68278000-68286000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr8:68282000-68293000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:68282600-68289600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:68283000-68292400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:68283200-68292400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:68283400-68314000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:68283800-68286200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:68283800-68286600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:68284600-68286400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:68285000-68288000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr8:68285200-68292800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:68285600-68286200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:68285600-68289800	Enhancers	Primary B cells from cord blood	blood
14	chr8:68285800-68286200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:68285800-68286200	Enhancers	K562	blood
16	chr8:68285800-68286200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr8:68285800-68286400	Enhancers	Primary hematopoietic stem cells	blood
18	chr8:68285800-68286400	Enhancers	Fetal Intestine Small	intestine
19	chr8:68285800-68286400	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr8:68285800-68286400	Enhancers	HepG2	liver
21	chr8:68285800-68286600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr8:68285800-68286600	Enhancers	A549	lung
23	chr8:68285800-68287400	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links