Variant report

Variant	rs6987385
Chromosome Location	chr8:68282835-68282836
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11987016	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11991868	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs11996976	1.00[AMR][1000 genomes]
rs16933261	1.00[AMR][1000 genomes]
rs55890263	1.00[AMR][1000 genomes]
rs56115531	1.00[AMR][1000 genomes]
rs56171881	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56322915	1.00[AMR][1000 genomes]
rs56675350	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60435775	1.00[AMR][1000 genomes]
rs73691320	1.00[AMR][1000 genomes]
rs73691326	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691328	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691329	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693157	1.00[AMR][1000 genomes]
rs73693186	1.00[AMR][1000 genomes]
rs7815796	1.00[AMR][1000 genomes]
rs7815839	1.00[AMR][1000 genomes]
rs7820540	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68278000-68286000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr8:68280400-68285800	Weak transcription	K562	blood
3	chr8:68281800-68283000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:68281800-68283200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:68282000-68283800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:68282000-68293000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:68282600-68283200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:68282600-68284400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:68282600-68284400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:68282600-68284400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:68282600-68289600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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