Variant report

Variant	rs7815796
Chromosome Location	chr8:68047094-68047095
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11985129	1.00[AMR][1000 genomes]
rs11987016	1.00[AMR][1000 genomes]
rs11987703	1.00[AMR][1000 genomes]
rs11988493	1.00[AMR][1000 genomes]
rs11991444	1.00[AMR][1000 genomes]
rs11991868	1.00[AMR][1000 genomes]
rs11994200	1.00[AMR][1000 genomes]
rs11995086	1.00[AMR][1000 genomes]
rs11995838	1.00[AMR][1000 genomes]
rs11996976	1.00[AMR][1000 genomes]
rs13280915	1.00[AMR][1000 genomes]
rs16933261	1.00[AMR][1000 genomes]
rs35871529	1.00[AMR][1000 genomes]
rs55773727	1.00[AMR][1000 genomes]
rs55890263	1.00[AMR][1000 genomes]
rs55908156	1.00[AMR][1000 genomes]
rs56115531	1.00[AMR][1000 genomes]
rs56322915	1.00[AMR][1000 genomes]
rs56946170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58005291	1.00[AMR][1000 genomes]
rs59037712	1.00[AMR][1000 genomes]
rs59483566	1.00[AMR][1000 genomes]
rs60303565	1.00[AMR][1000 genomes]
rs60435775	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60452538	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6987385	1.00[AMR][1000 genomes]
rs73691150	1.00[AMR][1000 genomes]
rs73691154	1.00[AMR][1000 genomes]
rs73691155	1.00[AMR][1000 genomes]
rs73691160	1.00[AMR][1000 genomes]
rs73691181	1.00[AMR][1000 genomes]
rs73691184	1.00[AMR][1000 genomes]
rs73691320	1.00[AMR][1000 genomes]
rs73693108	1.00[AMR][1000 genomes]
rs73693123	1.00[AMR][1000 genomes]
rs73693157	1.00[AMR][1000 genomes]
rs73693186	1.00[AMR][1000 genomes]
rs73693624	1.00[AMR][1000 genomes]
rs73693628	1.00[AMR][1000 genomes]
rs73693633	1.00[AMR][1000 genomes]
rs7815839	1.00[AMR][1000 genomes]
rs7820540	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016742	chr8:67917418-68125319	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv539639	chr8:67917418-68125319	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv1795021	chr8:67995266-68068812	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1846804	chr8:67995266-68074422	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1802127	chr8:67995266-68076723	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1022561	chr8:68011159-68129755	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1024156	chr8:68018110-68130602	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv539640	chr8:68018110-68130602	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1016128	chr8:68019177-68129755	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv1028249	chr8:68022357-68127243	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv1029236	chr8:68022357-68129755	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv1020062	chr8:68022357-68135111	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv1025996	chr8:68025803-68129755	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
14	nsv1019276	chr8:68026084-68130602	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
15	nsv539641	chr8:68026084-68130602	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
16	nsv1026508	chr8:68038761-68135111	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67978200-68074400	Weak transcription	Esophagus	oesophagus
2	chr8:67978600-68074200	Weak transcription	Psoas Muscle	Psoas
3	chr8:67988200-68074800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr8:67990400-68074400	Weak transcription	Spleen	Spleen
5	chr8:67993400-68085000	Weak transcription	Aorta	Aorta
6	chr8:68008000-68062400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:68021000-68066800	Weak transcription	Lung	lung
8	chr8:68021000-68074400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:68021800-68048800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:68022600-68050800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:68022800-68090800	Weak transcription	Small Intestine	intestine
12	chr8:68024200-68092400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:68026000-68074400	Weak transcription	Gastric	stomach
14	chr8:68028400-68074400	Weak transcription	Pancreas	Pancrea
15	chr8:68028600-68074400	Weak transcription	NHEK	skin
16	chr8:68029400-68074000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr8:68033400-68054600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr8:68033800-68074400	Weak transcription	Colonic Mucosa	Colon
19	chr8:68035600-68047800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr8:68036000-68074400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:68036200-68071400	Weak transcription	Thymus	Thymus
22	chr8:68037000-68051000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr8:68037400-68047800	Strong transcription	Placenta	Placenta
24	chr8:68041200-68047400	Strong transcription	HSMM	muscle
25	chr8:68041200-68077800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr8:68042200-68049400	Strong transcription	Fetal Thymus	thymus
27	chr8:68042400-68050600	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:68042800-68051000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr8:68043000-68049400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr8:68043200-68051000	Strong transcription	K562	blood
31	chr8:68043400-68051000	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr8:68043600-68051200	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr8:68044000-68047200	Strong transcription	Ovary	ovary
34	chr8:68044000-68047200	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr8:68044000-68047400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr8:68044000-68047400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr8:68044000-68048200	Strong transcription	Primary T cells from cord blood	blood
38	chr8:68044000-68048400	Strong transcription	Duodenum Mucosa	Duodenum
39	chr8:68044000-68048400	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:68044000-68049600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr8:68044000-68050600	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr8:68044200-68047200	Strong transcription	Brain Hippocampus Middle	brain
43	chr8:68044200-68047200	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr8:68044200-68047400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr8:68044200-68047400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr8:68044200-68047400	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr8:68044200-68047600	Strong transcription	NH-A	brain
48	chr8:68044200-68049400	Strong transcription	Fetal Muscle Leg	muscle
49	chr8:68044200-68049600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr8:68044200-68050600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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