Variant report

Variant	rs11995838
Chromosome Location	chr8:67934729-67934730
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67932028..67934923-chr8:67938623..67940861,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178125	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11985129	1.00[AMR][1000 genomes]
rs11986740	1.00[AMR][1000 genomes]
rs11987703	1.00[AMR][1000 genomes]
rs11988493	1.00[AMR][1000 genomes]
rs11991444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11991868	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994200	1.00[AMR][1000 genomes]
rs11995086	1.00[ASW][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs11997452	0.91[YRI][hapmap]
rs11997510	1.00[AMR][1000 genomes]
rs13280915	1.00[AMR][1000 genomes]
rs35063782	1.00[AMR][1000 genomes]
rs35871529	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55773727	1.00[AMR][1000 genomes]
rs55878601	0.87[AFR][1000 genomes]
rs55908156	1.00[AMR][1000 genomes]
rs56036237	1.00[AMR][1000 genomes]
rs56115531	1.00[AMR][1000 genomes]
rs56322915	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56856536	1.00[AMR][1000 genomes]
rs56946170	1.00[AMR][1000 genomes]
rs58005291	1.00[AMR][1000 genomes]
rs58411534	1.00[AMR][1000 genomes]
rs59037712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59483566	1.00[AMR][1000 genomes]
rs60303565	1.00[AMR][1000 genomes]
rs60434307	1.00[AMR][1000 genomes]
rs60435775	1.00[AMR][1000 genomes]
rs60452538	1.00[AMR][1000 genomes]
rs61349439	1.00[AMR][1000 genomes]
rs61559694	1.00[AFR][1000 genomes]
rs6991442	1.00[AMR][1000 genomes]
rs6992429	1.00[AMR][1000 genomes]
rs6996635	0.83[AFR][1000 genomes]
rs6997204	1.00[AMR][1000 genomes]
rs6997393	1.00[AMR][1000 genomes]
rs7001834	1.00[AMR][1000 genomes]
rs7001886	1.00[AMR][1000 genomes]
rs7003330	1.00[AMR][1000 genomes]
rs7007783	0.83[AFR][1000 genomes]
rs7011698	1.00[ASW][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs7013888	0.90[YRI][hapmap]
rs73691150	1.00[AMR][1000 genomes]
rs73691152	0.87[AFR][1000 genomes]
rs73691154	1.00[AMR][1000 genomes]
rs73691155	1.00[AMR][1000 genomes]
rs73691160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691590	1.00[AMR][1000 genomes]
rs73691596	1.00[AMR][1000 genomes]
rs73691602	1.00[AMR][1000 genomes]
rs73693108	1.00[AMR][1000 genomes]
rs73693123	1.00[AMR][1000 genomes]
rs73693157	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693186	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693607	1.00[AMR][1000 genomes]
rs73693608	1.00[AMR][1000 genomes]
rs73693609	1.00[AMR][1000 genomes]
rs73693616	1.00[AMR][1000 genomes]
rs73693617	1.00[AMR][1000 genomes]
rs73693618	1.00[AMR][1000 genomes]
rs73693622	1.00[AMR][1000 genomes]
rs73693624	1.00[AMR][1000 genomes]
rs73693628	1.00[AMR][1000 genomes]
rs73693633	1.00[AMR][1000 genomes]
rs7815796	1.00[AMR][1000 genomes]
rs7815839	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820540	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820637	1.00[AMR][1000 genomes]
rs7820650	1.00[YRI][hapmap]
rs9694590	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802652	chr8:67894007-67964309	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1016742	chr8:67917418-68125319	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv539639	chr8:67917418-68125319	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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