Variant report

Variant	rs11986740
Chromosome Location	chr8:67697245-67697246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67685899..67688249-chr8:67695621..67698620,2	K562	blood:
2	chr8:67688763..67691724-chr8:67695253..67698238,2	K562	blood:
3	chr8:67688763..67692905-chr8:67695253..67699277,4	K562	blood:
4	chr8:67692976..67695060-chr8:67697151..67699264,2	MCF-7	breast:
5	chr8:67696595..67699423-chr8:67701052..67703162,2	MCF-7	breast:
6	chr8:67625790..67629580-chr8:67694202..67697997,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104205	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11985129	1.00[AMR][1000 genomes]
rs11987703	1.00[AMR][1000 genomes]
rs11988493	1.00[AMR][1000 genomes]
rs11991444	1.00[AMR][1000 genomes]
rs11994200	1.00[AMR][1000 genomes]
rs11995086	1.00[AMR][1000 genomes]
rs11995838	1.00[AMR][1000 genomes]
rs11997260	1.00[ASW][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11997510	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13280915	1.00[AMR][1000 genomes]
rs17422752	1.00[TSI][hapmap]
rs35063782	1.00[AMR][1000 genomes]
rs35871529	1.00[AMR][1000 genomes]
rs55773727	1.00[AMR][1000 genomes]
rs55784133	0.96[AFR][1000 genomes]
rs55908156	1.00[AMR][1000 genomes]
rs56036237	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56100064	0.96[AFR][1000 genomes]
rs56856536	1.00[AMR][1000 genomes]
rs58005291	1.00[AMR][1000 genomes]
rs58411534	1.00[AMR][1000 genomes]
rs58416462	0.96[AFR][1000 genomes]
rs58787759	0.92[AFR][1000 genomes]
rs59037712	1.00[AMR][1000 genomes]
rs59483566	1.00[AMR][1000 genomes]
rs60303565	1.00[AMR][1000 genomes]
rs60434307	1.00[AMR][1000 genomes]
rs61167401	0.96[AFR][1000 genomes]
rs61349439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6986931	1.00[AMR][1000 genomes]
rs6991442	1.00[AMR][1000 genomes]
rs6992429	1.00[AMR][1000 genomes]
rs6997204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6997393	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7001834	1.00[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7001886	1.00[AMR][1000 genomes]
rs7003330	1.00[AMR][1000 genomes]
rs7011698	1.00[AMR][1000 genomes]
rs73691150	1.00[AMR][1000 genomes]
rs73691154	1.00[AMR][1000 genomes]
rs73691155	1.00[AMR][1000 genomes]
rs73691160	1.00[AMR][1000 genomes]
rs73691181	1.00[AMR][1000 genomes]
rs73691184	1.00[AMR][1000 genomes]
rs73691590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691596	1.00[AMR][1000 genomes]
rs73691597	0.96[AFR][1000 genomes]
rs73691602	1.00[AMR][1000 genomes]
rs73693607	1.00[AMR][1000 genomes]
rs73693608	1.00[AMR][1000 genomes]
rs73693609	1.00[AMR][1000 genomes]
rs73693616	1.00[AMR][1000 genomes]
rs73693617	1.00[AMR][1000 genomes]
rs73693618	1.00[AMR][1000 genomes]
rs73693622	1.00[AMR][1000 genomes]
rs73693624	1.00[AMR][1000 genomes]
rs73693628	1.00[AMR][1000 genomes]
rs73693633	1.00[AMR][1000 genomes]
rs7820637	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9694590	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67687800-67702600	Weak transcription	Spleen	Spleen
2	chr8:67688000-67713800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:67688000-67783000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:67688200-67703800	Weak transcription	Lung	lung
5	chr8:67688200-67738000	Weak transcription	HSMM	muscle
6	chr8:67688400-67703000	Weak transcription	Aorta	Aorta
7	chr8:67688400-67706600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr8:67688400-67730400	Weak transcription	HSMMtube	muscle
9	chr8:67688600-67698000	Weak transcription	Psoas Muscle	Psoas
10	chr8:67688600-67699400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:67688600-67707000	Weak transcription	Thymus	Thymus
12	chr8:67688800-67702800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:67688800-67706600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:67688800-67707000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr8:67688800-67707200	Weak transcription	Colonic Mucosa	Colon
16	chr8:67688800-67709800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:67689000-67782600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr8:67689200-67707200	Weak transcription	Colon Smooth Muscle	Colon
19	chr8:67689600-67702800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr8:67689800-67709600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr8:67690000-67702400	Weak transcription	Fetal Intestine Large	intestine
22	chr8:67690200-67700400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr8:67690200-67706000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr8:67691000-67699200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr8:67691600-67730600	Weak transcription	Fetal Stomach	stomach
26	chr8:67692400-67697400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr8:67692400-67697400	Enhancers	Brain Cingulate Gyrus	brain
28	chr8:67693800-67698600	Enhancers	Primary B cells from cord blood	blood
29	chr8:67693800-67706800	Weak transcription	Fetal Thymus	thymus
30	chr8:67694000-67697400	Enhancers	Brain Substantia Nigra	brain
31	chr8:67694200-67705600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr8:67695200-67697400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:67695400-67697600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr8:67695400-67721600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:67695600-67698800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:67695800-67706800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr8:67696000-67697400	Enhancers	Brain Anterior Caudate	brain
38	chr8:67696000-67698000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr8:67696000-67698600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:67696000-67698800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:67696000-67699800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr8:67696000-67701400	Enhancers	Brain Angular Gyrus	brain
43	chr8:67696000-67703600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr8:67696200-67697400	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr8:67696200-67697800	Enhancers	HepG2	liver
46	chr8:67696200-67698200	Enhancers	Primary B cells from peripheral blood	blood
47	chr8:67696200-67698200	Enhancers	Primary hematopoietic stem cells	blood
48	chr8:67696200-67698800	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr8:67696400-67698200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr8:67696400-67698200	Enhancers	Liver	Liver

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