Variant report

Variant	rs7011698
Chromosome Location	chr8:67763025-67763026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11985129	1.00[AMR][1000 genomes]
rs11986740	1.00[AMR][1000 genomes]
rs11987703	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11988493	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11988681	1.00[LWK][hapmap];0.85[MKK][hapmap]
rs11991125	1.00[ASW][hapmap]
rs11991444	1.00[AMR][1000 genomes]
rs11994200	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11995086	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11995838	1.00[ASW][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs11997452	1.00[YRI][hapmap]
rs11997510	1.00[AMR][1000 genomes]
rs13280915	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35063782	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35871529	1.00[ASW][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs55773727	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55908156	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56036237	1.00[AMR][1000 genomes]
rs56856536	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56946170	1.00[AMR][1000 genomes]
rs58005291	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58411534	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59037712	1.00[AMR][1000 genomes]
rs59483566	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60303565	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60434307	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60452538	1.00[AMR][1000 genomes]
rs61349439	1.00[AMR][1000 genomes]
rs6986931	1.00[AMR][1000 genomes]
rs6991442	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6992429	1.00[LWK][hapmap];0.85[MKK][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6997204	1.00[AMR][1000 genomes]
rs6997393	1.00[AMR][1000 genomes]
rs7001834	1.00[AMR][1000 genomes]
rs7001886	1.00[AMR][1000 genomes]
rs7002788	0.85[MKK][hapmap]
rs7003330	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7007645	0.82[AFR][1000 genomes]
rs7013888	0.82[YRI][hapmap]
rs73691150	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691154	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691155	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691160	1.00[AMR][1000 genomes]
rs73691181	1.00[AMR][1000 genomes]
rs73691184	1.00[AMR][1000 genomes]
rs73691590	1.00[AMR][1000 genomes]
rs73691596	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691602	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693108	1.00[AMR][1000 genomes]
rs73693123	1.00[AMR][1000 genomes]
rs73693607	1.00[AMR][1000 genomes]
rs73693608	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693609	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693616	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693617	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693618	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693624	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693633	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7820637	1.00[AMR][1000 genomes]
rs9694590	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67688000-67783000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67689000-67782600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:67696600-67767200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:67696800-67783000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:67707600-67772200	Weak transcription	Thymus	Thymus
6	chr8:67707600-67773000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:67707600-67777000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr8:67707600-67783000	Weak transcription	Gastric	stomach
9	chr8:67711800-67782600	Weak transcription	HepG2	liver
10	chr8:67712200-67777200	Weak transcription	Esophagus	oesophagus
11	chr8:67723800-67768400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:67727000-67777200	Weak transcription	Pancreas	Pancrea
13	chr8:67727000-67782600	Weak transcription	Aorta	Aorta
14	chr8:67734200-67776000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr8:67739800-67774200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr8:67741800-67774200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:67741800-67774200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr8:67743400-67767800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:67743400-67772400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:67744200-67767600	Weak transcription	Brain Angular Gyrus	brain
21	chr8:67744600-67782800	Weak transcription	HSMM	muscle
22	chr8:67746600-67773000	Weak transcription	Small Intestine	intestine
23	chr8:67749800-67773000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr8:67753600-67777200	Weak transcription	Spleen	Spleen
25	chr8:67754800-67773200	Weak transcription	Fetal Thymus	thymus
26	chr8:67755200-67771400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr8:67755400-67774000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr8:67757000-67782400	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:67757400-67782400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:67758000-67773400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:67758200-67766000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:67758200-67770400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr8:67758600-67773400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr8:67758600-67776000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:67758800-67763400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr8:67758800-67764600	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr8:67758800-67772400	Strong transcription	Liver	Liver
38	chr8:67759000-67763600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr8:67759000-67764200	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr8:67759000-67772800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr8:67759200-67763600	Strong transcription	Brain Hippocampus Middle	brain
42	chr8:67759200-67763800	Strong transcription	Primary T cells from cord blood	blood
43	chr8:67759200-67766600	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr8:67759400-67767000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr8:67759400-67769200	Weak transcription	Fetal Intestine Small	intestine
46	chr8:67759800-67763600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr8:67759800-67765000	Weak transcription	NHDF-Ad	bronchial
48	chr8:67760000-67765600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr8:67760200-67763600	Strong transcription	Primary B cells from cord blood	blood
50	chr8:67760200-67763600	Strong transcription	Primary hematopoietic stem cells	blood

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