Variant report

Variant	rs11995086
Chromosome Location	chr8:67833750-67833751
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:67825616..67828276-chr8:67831795..67834715,3	MCF-7	breast:
2	chr8:67827975..67841001-chr8:67966279..67982243,48	K562	blood:
3	chr8:67831270..67834163-chr8:68004872..68007019,2	K562	blood:
4	chr8:67432728..67435417-chr8:67831392..67833767,2	MCF-7	breast:
5	chr8:67371439..67373634-chr8:67831898..67834406,2	MCF-7	breast:
6	chr8:67576844..67579511-chr8:67833721..67836936,3	MCF-7	breast:
7	chr8:67828966..67835690-chr8:67939145..67944421,12	MCF-7	breast:
8	chr8:67831601..67833863-chr8:68059505..68062271,2	MCF-7	breast:
9	chr8:67833327..67839681-chr8:67939129..67942608,10	MCF-7	breast:
10	chr8:67831268..67834338-chr8:67951329..67953528,3	K562	blood:
11	chr8:67831901..67834274-chr8:68007659..68009308,2	K562	blood:
12	chr8:67831819..67834409-chr8:68034635..68036146,2	K562	blood:
13	chr8:67830433..67839604-chr8:67970368..67979371,24	MCF-7	breast:
14	chr8:67830645..67839054-chr8:67969883..67975997,15	MCF-7	breast:
15	chr8:67828671..67841001-chr8:67968948..67981786,43	K562	blood:
16	chr8:67831457..67834184-chr8:68011010..68013748,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000169085	Chromatin interaction
ENSG00000252637	Chromatin interaction
ENSG00000266491	Chromatin interaction
ENSG00000104218	Chromatin interaction
ENSG00000178125	Chromatin interaction
ENSG00000175073	Chromatin interaction
ENSG00000121022	Chromatin interaction
ENSG00000147576	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11985129	1.00[AMR][1000 genomes]
rs11986740	1.00[AMR][1000 genomes]
rs11987703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11988493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11988681	1.00[LWK][hapmap];0.85[MKK][hapmap]
rs11991125	1.00[ASW][hapmap]
rs11991444	1.00[AMR][1000 genomes]
rs11994200	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11995838	1.00[ASW][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs11997452	1.00[YRI][hapmap]
rs11997510	1.00[AMR][1000 genomes]
rs13280915	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35063782	1.00[AMR][1000 genomes]
rs35871529	1.00[ASW][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs55773727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55908156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56036237	1.00[AMR][1000 genomes]
rs56856536	1.00[AMR][1000 genomes]
rs56946170	1.00[AMR][1000 genomes]
rs58005291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58411534	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59037712	1.00[AMR][1000 genomes]
rs59483566	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59550227	0.92[AFR][1000 genomes]
rs60303565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60434307	1.00[AMR][1000 genomes]
rs60435775	1.00[AMR][1000 genomes]
rs60452538	1.00[AMR][1000 genomes]
rs61349439	1.00[AMR][1000 genomes]
rs6991442	1.00[AMR][1000 genomes]
rs6992429	1.00[LWK][hapmap];0.85[MKK][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs6997204	1.00[AMR][1000 genomes]
rs6997393	1.00[AMR][1000 genomes]
rs7001834	1.00[AMR][1000 genomes]
rs7001886	1.00[AMR][1000 genomes]
rs7002788	0.85[MKK][hapmap]
rs7003330	1.00[AMR][1000 genomes]
rs7011698	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7013888	0.82[YRI][hapmap]
rs73691150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691160	1.00[AMR][1000 genomes]
rs73691181	1.00[AMR][1000 genomes]
rs73691184	1.00[AMR][1000 genomes]
rs73691590	1.00[AMR][1000 genomes]
rs73691596	1.00[AMR][1000 genomes]
rs73691602	1.00[AMR][1000 genomes]
rs73693108	1.00[AMR][1000 genomes]
rs73693123	1.00[AMR][1000 genomes]
rs73693607	1.00[AMR][1000 genomes]
rs73693608	1.00[AMR][1000 genomes]
rs73693609	1.00[AMR][1000 genomes]
rs73693616	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693617	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693618	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693622	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693624	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693628	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693633	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7815796	1.00[AMR][1000 genomes]
rs7815839	1.00[AMR][1000 genomes]
rs7820540	1.00[AMR][1000 genomes]
rs7820637	1.00[AMR][1000 genomes]
rs9694590	1.00[AMR][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67822600-67836600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67822800-67834600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:67828800-67834000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:67829000-67834000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:67829000-67835000	Weak transcription	Thymus	Thymus
6	chr8:67829000-67835400	Weak transcription	Spleen	Spleen
7	chr8:67829000-67836800	Weak transcription	Aorta	Aorta
8	chr8:67829600-67834800	Weak transcription	Brain Anterior Caudate	brain
9	chr8:67829600-67835200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:67829600-67836000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr8:67830000-67834400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr8:67830200-67833800	Weak transcription	HUVEC	blood vessel
13	chr8:67830200-67834400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr8:67830200-67834400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:67830200-67834400	Weak transcription	Right Atrium	heart
16	chr8:67830200-67835200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:67830400-67833800	Weak transcription	Primary T cells from cord blood	blood
18	chr8:67830400-67834000	Weak transcription	Fetal Kidney	kidney
19	chr8:67830400-67835200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:67830600-67833800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr8:67830800-67833800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr8:67831000-67833800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr8:67831000-67835800	Weak transcription	Lung	lung
24	chr8:67831200-67835800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr8:67831400-67834000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:67831400-67834000	Weak transcription	Fetal Heart	heart
27	chr8:67831400-67834400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:67831400-67835200	Weak transcription	Brain Hippocampus Middle	brain
29	chr8:67831600-67833800	Enhancers	K562	blood
30	chr8:67831600-67834400	Weak transcription	Small Intestine	intestine
31	chr8:67831600-67835200	Weak transcription	Fetal Stomach	stomach
32	chr8:67831600-67835200	Weak transcription	Ovary	ovary
33	chr8:67831800-67835800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:67832000-67833800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr8:67832000-67833800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr8:67832000-67833800	Weak transcription	Hela-S3	cervix
37	chr8:67832000-67833800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr8:67832000-67835400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr8:67832000-67835400	Weak transcription	Stomach Mucosa	stomach
40	chr8:67832200-67833800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr8:67832200-67833800	Weak transcription	HepG2	liver
42	chr8:67832200-67834400	Weak transcription	Colon Smooth Muscle	Colon
43	chr8:67832200-67834600	Weak transcription	Fetal Intestine Small	intestine
44	chr8:67832200-67836000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr8:67832200-67836000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr8:67832400-67834200	Weak transcription	Brain Germinal Matrix	brain
47	chr8:67832400-67834400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:67832400-67834400	Strong transcription	Left Ventricle	heart
49	chr8:67832400-67834800	Weak transcription	HSMMtube	muscle
50	chr8:67832600-67833800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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