Variant report

Variant	rs11997452
Chromosome Location	chr8:67793478-67793479
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11985129	1.00[AMR][1000 genomes]
rs11986740	1.00[AMR][1000 genomes]
rs11987703	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11988493	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11991444	1.00[AMR][1000 genomes]
rs11994200	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11995086	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11995838	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs11997510	1.00[AMR][1000 genomes]
rs13280915	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35063782	1.00[AMR][1000 genomes]
rs35871529	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs55773727	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55908156	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56036237	1.00[AMR][1000 genomes]
rs56856536	1.00[AMR][1000 genomes]
rs56946170	1.00[AMR][1000 genomes]
rs58005291	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58411534	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59037712	1.00[AMR][1000 genomes]
rs59483566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59550227	0.86[AFR][1000 genomes]
rs60303565	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60434307	1.00[AMR][1000 genomes]
rs60452538	1.00[AMR][1000 genomes]
rs61349439	1.00[AMR][1000 genomes]
rs6991442	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6992429	0.84[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6997204	1.00[AMR][1000 genomes]
rs6997393	1.00[AMR][1000 genomes]
rs7001834	1.00[AMR][1000 genomes]
rs7001886	1.00[AMR][1000 genomes]
rs7003330	1.00[AMR][1000 genomes]
rs7011698	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7013888	0.84[YRI][hapmap]
rs73691150	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691154	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691160	1.00[AMR][1000 genomes]
rs73691181	1.00[AMR][1000 genomes]
rs73691184	1.00[AMR][1000 genomes]
rs73691590	1.00[AMR][1000 genomes]
rs73691596	1.00[AMR][1000 genomes]
rs73691602	1.00[AMR][1000 genomes]
rs73693108	1.00[AMR][1000 genomes]
rs73693123	1.00[AMR][1000 genomes]
rs73693607	1.00[AMR][1000 genomes]
rs73693608	1.00[AMR][1000 genomes]
rs73693609	1.00[AMR][1000 genomes]
rs73693616	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693617	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693618	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693622	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693624	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7815796	1.00[AMR][1000 genomes]
rs7820637	1.00[AMR][1000 genomes]
rs9694590	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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