Variant report

Variant	rs61559694
Chromosome Location	chr8:67924368-67924369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11991444	1.00[AFR][1000 genomes]
rs11991868	0.88[AFR][1000 genomes]
rs11995838	1.00[AFR][1000 genomes]
rs34375479	1.00[ASN][1000 genomes]
rs35871529	0.96[AFR][1000 genomes]
rs55878601	0.87[AFR][1000 genomes]
rs56322915	0.88[AFR][1000 genomes]
rs59037712	1.00[AFR][1000 genomes]
rs6996635	0.83[AFR][1000 genomes]
rs7007783	0.83[AFR][1000 genomes]
rs73691152	0.87[AFR][1000 genomes]
rs73691160	1.00[AFR][1000 genomes]
rs73691181	1.00[AFR][1000 genomes]
rs73691184	1.00[AFR][1000 genomes]
rs73693157	0.88[AFR][1000 genomes]
rs7815839	0.91[AFR][1000 genomes]
rs7820540	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802652	chr8:67894007-67964309	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1016742	chr8:67917418-68125319	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv539639	chr8:67917418-68125319	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67917200-67925800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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