Variant report

Variant	rs56172105
Chromosome Location	chr11:73240279-73240280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73231178..73234417-chr11:73236795..73240578,4	MCF-7	breast:
2	chr11:73234270..73236131-chr11:73239079..73240678,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55857389	0.89[AMR][1000 genomes]
rs56021202	0.89[AMR][1000 genomes]
rs56091126	1.00[AMR][1000 genomes]
rs56128908	0.89[AMR][1000 genomes]
rs56317898	0.89[AMR][1000 genomes]
rs57960575	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58602796	0.89[AMR][1000 genomes]
rs58860545	0.87[AMR][1000 genomes]
rs59151156	0.89[AMR][1000 genomes]
rs59570366	0.89[AMR][1000 genomes]
rs61528734	0.88[AFR][1000 genomes]
rs7104108	0.90[AFR][1000 genomes]
rs7118920	0.89[AMR][1000 genomes]
rs7126544	0.89[AMR][1000 genomes]
rs7929493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7937197	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7939378	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1048171	chr11:73210060-73271831	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73205800-73241400	Weak transcription	Pancreas	Pancrea
2	chr11:73219200-73241400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr11:73232600-73249400	Weak transcription	Brain Germinal Matrix	brain
4	chr11:73233000-73241400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:73236600-73240400	Enhancers	Dnd41	blood
6	chr11:73236600-73244200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:73237400-73240400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr11:73237600-73240400	Enhancers	Primary T cells from cord blood	blood
9	chr11:73237800-73244200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:73238000-73240400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:73238000-73240400	Enhancers	Psoas Muscle	Psoas
12	chr11:73238000-73241000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr11:73238000-73241000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:73238000-73241600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:73238200-73240400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:73238400-73243600	Weak transcription	Aorta	Aorta
17	chr11:73238600-73240600	Enhancers	Fetal Heart	heart
18	chr11:73238600-73244000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:73239000-73240400	Enhancers	Fetal Intestine Large	intestine
20	chr11:73239000-73240400	Enhancers	Fetal Thymus	thymus
21	chr11:73239000-73245800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:73239200-73240400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:73239200-73240400	Enhancers	Gastric	stomach
24	chr11:73239400-73240400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:73239400-73241200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:73239600-73240400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:73239600-73240400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:73239600-73240400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:73239600-73240400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:73239600-73240400	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr11:73239600-73240400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:73239600-73240400	Flanking Active TSS	HMEC	breast
33	chr11:73239600-73240400	Enhancers	HUVEC	blood vessel
34	chr11:73239600-73240400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr11:73239600-73240600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr11:73239600-73240800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr11:73239600-73240800	Enhancers	Right Ventricle	heart
38	chr11:73239600-73242800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:73239800-73240400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:73239800-73240400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:73239800-73240600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr11:73239800-73240600	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr11:73239800-73240600	Enhancers	Thymus	Thymus
44	chr11:73240000-73240400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:73240000-73240400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr11:73240000-73240400	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr11:73240000-73240400	Enhancers	Primary B cells from peripheral blood	blood
48	chr11:73240000-73240400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:73240000-73240400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:73240000-73240400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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