Variant report

Variant	rs7104108
Chromosome Location	chr11:73189317-73189318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73188697..73191006-chr11:73192840..73195131,3	MCF-7	breast:
2	chr11:73183792..73185927-chr11:73188418..73190143,2	K562	blood:
3	chr11:73188446..73190226-chr11:73307611..73309619,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054965	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11826366	1.00[AMR][1000 genomes]
rs12287163	0.89[AMR][1000 genomes]
rs56172105	0.90[AFR][1000 genomes]
rs57795042	0.87[AMR][1000 genomes]
rs57960575	0.88[AFR][1000 genomes]
rs58062099	0.89[AMR][1000 genomes]
rs59043885	0.87[AMR][1000 genomes]
rs60741352	0.87[AMR][1000 genomes]
rs61528734	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104483	0.89[AMR][1000 genomes]
rs7929493	0.90[AFR][1000 genomes]
rs7937197	0.87[AFR][1000 genomes]
rs7939378	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv520130	chr11:73183598-73223776	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
4	chr11:73163800-73225600	Weak transcription	Fetal Stomach	stomach
5	chr11:73168600-73189800	Weak transcription	Hela-S3	cervix
6	chr11:73172800-73218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:73177000-73189800	Weak transcription	Fetal Heart	heart
8	chr11:73177400-73189800	Weak transcription	HMEC	breast
9	chr11:73177400-73190000	Weak transcription	Osteobl	bone
10	chr11:73177400-73191400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:73177400-73191800	Weak transcription	NHDF-Ad	bronchial
12	chr11:73178600-73190000	Weak transcription	Fetal Brain Male	brain
13	chr11:73179600-73192400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:73180000-73191800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:73180600-73189600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:73181600-73189800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:73182000-73230000	Weak transcription	Dnd41	blood
18	chr11:73182200-73189400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:73186200-73205200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:73187200-73189800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:73187200-73191600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr11:73187400-73193000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:73188000-73189600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:73188400-73200400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:73188600-73191400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:73188800-73203200	Weak transcription	Primary B cells from cord blood	blood

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