Variant report

Variant	rs12287163
Chromosome Location	chr11:73192246-73192247
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11826366	0.89[AMR][1000 genomes]
rs12146658	0.92[AFR][1000 genomes]
rs55857389	0.81[AFR][1000 genomes]
rs56021202	0.83[AFR][1000 genomes]
rs56045329	0.94[AFR][1000 genomes]
rs56128908	0.86[AFR][1000 genomes]
rs56135026	0.92[AFR][1000 genomes]
rs56317898	0.88[AFR][1000 genomes]
rs58062099	1.00[AMR][1000 genomes]
rs58602796	0.88[AFR][1000 genomes]
rs59151156	0.85[AFR][1000 genomes]
rs61528734	0.89[AMR][1000 genomes]
rs7104108	0.89[AMR][1000 genomes]
rs7104483	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7105000	0.92[AFR][1000 genomes]
rs7118920	0.88[AFR][1000 genomes]
rs7120131	0.92[AFR][1000 genomes]
rs7126544	0.88[AFR][1000 genomes]
rs7931840	0.83[AFR][1000 genomes]
rs7932197	0.86[AFR][1000 genomes]
rs7933274	0.92[AFR][1000 genomes]
rs7939378	0.89[AMR][1000 genomes]
rs7945984	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv520130	chr11:73183598-73223776	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
3	chr11:73163800-73225600	Weak transcription	Fetal Stomach	stomach
4	chr11:73172800-73218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:73179600-73192400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:73182000-73230000	Weak transcription	Dnd41	blood
7	chr11:73186200-73205200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:73187400-73193000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:73188400-73200400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:73188800-73203200	Weak transcription	Primary B cells from cord blood	blood
11	chr11:73189600-73194800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:73189600-73197000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:73190200-73195800	Weak transcription	HSMM	muscle
14	chr11:73190200-73204400	Weak transcription	Psoas Muscle	Psoas
15	chr11:73191400-73192600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr11:73191600-73192400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:73191600-73192400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:73191600-73192600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr11:73191800-73192400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:73192000-73192400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr11:73192000-73192400	Enhancers	Liver	Liver
22	chr11:73192000-73192400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:73192000-73192800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:73192000-73193000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:73192200-73192400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:73192200-73201600	Weak transcription	NHDF-Ad	bronchial

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