Variant report

Variant	rs7932197
Chromosome Location	chr11:73130400-73130401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73129080..73130948-chr11:73308389..73309982,2	MCF-7	breast:
2	chr11:73129898..73132865-chr11:73133387..73134991,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054965	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11823008	0.91[EUR][1000 genomes]
rs11823289	0.80[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12146658	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12287163	0.86[AFR][1000 genomes]
rs17851510	1.00[MEX][hapmap]
rs34304845	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55727935	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55940558	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56021202	0.81[AFR][1000 genomes]
rs56045329	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56057109	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56128908	0.82[AFR][1000 genomes]
rs56135026	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56187614	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56193465	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56205113	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56260110	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56262837	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56317898	0.81[AFR][1000 genomes]
rs56332879	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56407713	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56701090	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57288336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58602796	0.81[AFR][1000 genomes]
rs58619954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58658035	0.81[EUR][1000 genomes]
rs58850636	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59151156	0.83[AFR][1000 genomes]
rs59199852	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59212255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59250186	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59912809	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60578483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61236919	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61361454	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61527032	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104483	1.00[ASW][hapmap];0.94[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7105000	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105567	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105802	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105824	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7109601	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs7118920	0.81[AFR][1000 genomes]
rs7119049	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120131	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120967	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7126544	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7128786	0.81[ASW][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7131044	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7924394	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7928848	0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7931840	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936584	0.91[EUR][1000 genomes]
rs7945735	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7945984	1.00[ASW][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949882	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73098600-73132400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr11:73099200-73139800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:73099200-73141000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr11:73113600-73132600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:73115200-73132200	Weak transcription	Fetal Heart	heart
6	chr11:73115200-73132400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:73115200-73149400	Weak transcription	Fetal Kidney	kidney
8	chr11:73116800-73132600	Strong transcription	Primary B cells from cord blood	blood
9	chr11:73117000-73131400	Weak transcription	A549	lung
10	chr11:73118800-73137600	Weak transcription	Colonic Mucosa	Colon
11	chr11:73120800-73132600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:73120800-73133000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:73120800-73133000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:73120800-73140600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:73120800-73141200	Weak transcription	Esophagus	oesophagus
16	chr11:73120800-73149000	Weak transcription	Fetal Lung	lung
17	chr11:73120800-73149800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:73120800-73150000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:73121000-73133000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:73121000-73150200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:73121600-73132400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:73122200-73131800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:73122400-73134400	Weak transcription	NHEK	skin
24	chr11:73122400-73163200	Weak transcription	Aorta	Aorta
25	chr11:73122600-73132600	Weak transcription	Lung	lung
26	chr11:73122600-73134400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:73122800-73139000	Weak transcription	Spleen	Spleen
28	chr11:73122800-73149600	Weak transcription	Gastric	stomach
29	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:73124000-73140800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:73126000-73132000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr11:73126600-73137400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:73126600-73149400	Weak transcription	Small Intestine	intestine
34	chr11:73126800-73133000	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr11:73126800-73137200	Weak transcription	Colon Smooth Muscle	Colon
36	chr11:73127200-73131600	Strong transcription	Primary T cells from cord blood	blood
37	chr11:73127400-73131600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:73127400-73131800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:73127600-73131000	Weak transcription	HepG2	liver
40	chr11:73127800-73131000	Strong transcription	Fetal Stomach	stomach
41	chr11:73127800-73136600	Weak transcription	Brain Angular Gyrus	brain
42	chr11:73127800-73137000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:73127800-73137400	Weak transcription	Right Ventricle	heart
44	chr11:73128000-73137400	Weak transcription	Psoas Muscle	Psoas
45	chr11:73128200-73130800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:73128200-73134200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:73128200-73137400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:73128400-73131600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:73128400-73131600	Weak transcription	HSMMtube	muscle
50	chr11:73128400-73132200	Weak transcription	Ovary	ovary

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