Variant report

Variant	rs7945735
Chromosome Location	chr11:73262203-73262204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11823008	1.00[EUR][1000 genomes]
rs11823289	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11825028	0.84[EUR][1000 genomes]
rs12290367	0.84[EUR][1000 genomes]
rs34304845	0.81[AMR][1000 genomes]
rs55727935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55940558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56045329	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56057109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56135026	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56187614	0.81[AMR][1000 genomes]
rs56193465	0.91[EUR][1000 genomes]
rs56205113	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56260110	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56262837	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56332879	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56407713	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56701090	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57288336	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58619954	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58850636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59199852	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59212255	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59250186	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59912809	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60578483	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61236919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61361454	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61527032	0.91[EUR][1000 genomes]
rs6592525	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105000	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105567	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105802	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105824	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119049	0.91[EUR][1000 genomes]
rs7120131	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7128786	0.91[EUR][1000 genomes]
rs7128980	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7131044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7131397	0.84[EUR][1000 genomes]
rs7931840	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7932197	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7933274	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7936584	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7945984	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7949882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1048171	chr11:73210060-73271831	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73243400-73279600	Weak transcription	Fetal Stomach	stomach
2	chr11:73243800-73263000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:73249600-73266000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:73249600-73266400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:73249600-73276000	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:73249800-73262600	Weak transcription	Brain Anterior Caudate	brain
7	chr11:73250000-73262600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:73250000-73262600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:73250000-73262800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:73250000-73265800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:73250200-73266400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:73250200-73278800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:73250800-73265800	Weak transcription	Right Atrium	heart
15	chr11:73250800-73282800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:73251000-73265600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:73251000-73288800	Weak transcription	Thymus	Thymus
18	chr11:73251200-73263000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:73251600-73262400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:73251600-73266000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:73253600-73265800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:73253800-73307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:73257600-73266000	Weak transcription	Left Ventricle	heart
24	chr11:73258600-73266000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:73258800-73278000	Weak transcription	Primary B cells from cord blood	blood
26	chr11:73259800-73265600	Weak transcription	GM12878-XiMat	blood
27	chr11:73260000-73265200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr11:73260600-73262800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr11:73260600-73263000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:73260800-73263200	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr11:73260800-73266000	Weak transcription	Gastric	stomach
32	chr11:73261000-73262800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:73261000-73263000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:73261000-73265600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:73261800-73262600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr11:73261800-73263200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:73261800-73263200	Enhancers	Dnd41	blood
38	chr11:73261800-73263400	Enhancers	Brain Substantia Nigra	brain
39	chr11:73262000-73263000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr11:73262000-73263000	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr11:73262000-73263200	Enhancers	Brain Angular Gyrus	brain
42	chr11:73262200-73262400	Enhancers	Primary T cells fromperipheralblood	blood
43	chr11:73262200-73262400	Enhancers	Right Ventricle	heart
44	chr11:73262200-73262800	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr11:73262200-73263000	Enhancers	Primary T cells from cord blood	blood
46	chr11:73262200-73263200	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr11:73262200-73263200	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr11:73262200-73263200	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr11:73262200-73263200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr11:73262200-73263200	Enhancers	Primary T helper cells fromperipheralblood	blood

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