Variant report

Variant	rs11825028
Chromosome Location	chr11:73264755-73264756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73262802..73266231-chr11:73269278..73271662,3	K562	blood:
2	chr11:73264067..73265727-chr11:73269943..73271455,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10898919	0.83[ASN][1000 genomes]
rs11235738	0.89[ASN][1000 genomes]
rs11235740	0.89[ASN][1000 genomes]
rs11235745	0.89[ASN][1000 genomes]
rs11235759	0.89[ASN][1000 genomes]
rs11235775	0.89[ASN][1000 genomes]
rs11235778	1.00[ASN][1000 genomes]
rs11235779	1.00[ASN][1000 genomes]
rs11823008	0.84[EUR][1000 genomes]
rs12269884	0.89[ASN][1000 genomes]
rs12274589	1.00[ASN][1000 genomes]
rs12282790	0.89[ASN][1000 genomes]
rs12282871	1.00[ASN][1000 genomes]
rs12288934	1.00[ASN][1000 genomes]
rs12290367	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12290835	0.89[ASN][1000 genomes]
rs12293596	0.89[ASN][1000 genomes]
rs13328886	0.89[ASN][1000 genomes]
rs3825005	0.89[ASN][1000 genomes]
rs55727935	0.84[EUR][1000 genomes]
rs55940558	0.84[EUR][1000 genomes]
rs56057109	0.84[EUR][1000 genomes]
rs56205113	0.84[EUR][1000 genomes]
rs56260110	0.84[EUR][1000 genomes]
rs56262837	0.84[EUR][1000 genomes]
rs56332879	0.84[EUR][1000 genomes]
rs56407713	0.84[EUR][1000 genomes]
rs56701090	0.84[EUR][1000 genomes]
rs56721062	1.00[ASN][1000 genomes]
rs57181830	1.00[ASN][1000 genomes]
rs57536508	1.00[ASN][1000 genomes]
rs58850636	0.84[EUR][1000 genomes]
rs59199852	0.84[EUR][1000 genomes]
rs59250186	0.84[EUR][1000 genomes]
rs59809325	0.89[ASN][1000 genomes]
rs59912809	0.84[EUR][1000 genomes]
rs59955477	0.89[ASN][1000 genomes]
rs59991976	1.00[ASN][1000 genomes]
rs60123349	0.89[ASN][1000 genomes]
rs60349984	0.89[ASN][1000 genomes]
rs60920919	0.89[ASN][1000 genomes]
rs61236919	0.84[EUR][1000 genomes]
rs61361454	0.84[EUR][1000 genomes]
rs61396858	0.89[ASN][1000 genomes]
rs61613696	1.00[ASN][1000 genomes]
rs7105567	0.84[EUR][1000 genomes]
rs7105802	0.84[EUR][1000 genomes]
rs7105824	0.84[EUR][1000 genomes]
rs7131044	0.84[EUR][1000 genomes]
rs7131397	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7936584	0.84[EUR][1000 genomes]
rs7945735	0.84[EUR][1000 genomes]
rs7949882	0.84[EUR][1000 genomes]
rs9888198	1.00[ASN][1000 genomes]
rs9888218	0.89[ASN][1000 genomes]
rs9971494	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1048171	chr11:73210060-73271831	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73243400-73279600	Weak transcription	Fetal Stomach	stomach
2	chr11:73249600-73266000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:73249600-73266400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:73249600-73276000	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:73250000-73265800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:73250200-73266400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:73250200-73278800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:73250800-73265800	Weak transcription	Right Atrium	heart
10	chr11:73250800-73282800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:73251000-73265600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:73251000-73288800	Weak transcription	Thymus	Thymus
13	chr11:73251600-73266000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:73253600-73265800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:73253800-73307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:73257600-73266000	Weak transcription	Left Ventricle	heart
17	chr11:73258600-73266000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:73258800-73278000	Weak transcription	Primary B cells from cord blood	blood
19	chr11:73259800-73265600	Weak transcription	GM12878-XiMat	blood
20	chr11:73260000-73265200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr11:73260800-73266000	Weak transcription	Gastric	stomach
22	chr11:73261000-73265600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:73262200-73281000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:73262400-73265800	Weak transcription	Fetal Intestine Large	intestine
25	chr11:73262400-73266000	Weak transcription	Right Ventricle	heart
26	chr11:73262600-73276800	Weak transcription	Brain Germinal Matrix	brain
27	chr11:73262800-73264800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:73262800-73265800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:73263000-73265800	Weak transcription	Primary T cells from cord blood	blood
30	chr11:73263000-73265800	Weak transcription	Psoas Muscle	Psoas
31	chr11:73263000-73266200	Weak transcription	Ovary	ovary
32	chr11:73263200-73265600	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:73263200-73265800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:73263200-73265800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr11:73263200-73265800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:73263200-73265800	Weak transcription	Brain Angular Gyrus	brain
37	chr11:73263200-73265800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr11:73263200-73266000	Weak transcription	Brain Anterior Caudate	brain
39	chr11:73263200-73269000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:73263200-73276000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:73263200-73306000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:73263400-73265800	Weak transcription	Fetal Heart	heart
43	chr11:73263400-73265800	Weak transcription	Fetal Intestine Small	intestine
44	chr11:73263400-73265800	Weak transcription	A549	lung
45	chr11:73263400-73266000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:73263400-73266000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:73263400-73266000	Weak transcription	Brain Substantia Nigra	brain
48	chr11:73263400-73270800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:73263600-73264800	Enhancers	Small Intestine	intestine
50	chr11:73263800-73265800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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