Variant report

Variant	rs11823008
Chromosome Location	chr11:73177185-73177186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73176153..73178479-chr11:73179417..73181736,2	MCF-7	breast:
2	chr11:73112642..73115479-chr11:73176315..73178999,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054965	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11823289	0.91[EUR][1000 genomes]
rs11825028	0.84[EUR][1000 genomes]
rs12290367	0.84[EUR][1000 genomes]
rs55727935	1.00[EUR][1000 genomes]
rs55940558	1.00[EUR][1000 genomes]
rs56045329	0.91[EUR][1000 genomes]
rs56057109	1.00[EUR][1000 genomes]
rs56135026	0.91[EUR][1000 genomes]
rs56193465	0.91[EUR][1000 genomes]
rs56205113	1.00[EUR][1000 genomes]
rs56260110	1.00[EUR][1000 genomes]
rs56262837	1.00[EUR][1000 genomes]
rs56332879	1.00[EUR][1000 genomes]
rs56407713	1.00[EUR][1000 genomes]
rs56701090	1.00[EUR][1000 genomes]
rs57288336	0.91[EUR][1000 genomes]
rs58619954	0.91[EUR][1000 genomes]
rs58850636	1.00[EUR][1000 genomes]
rs59199852	1.00[EUR][1000 genomes]
rs59212255	0.91[EUR][1000 genomes]
rs59250186	1.00[EUR][1000 genomes]
rs59912809	1.00[EUR][1000 genomes]
rs60578483	0.91[EUR][1000 genomes]
rs61236919	1.00[EUR][1000 genomes]
rs61361454	1.00[EUR][1000 genomes]
rs61527032	0.91[EUR][1000 genomes]
rs6592525	0.91[EUR][1000 genomes]
rs7105000	0.91[EUR][1000 genomes]
rs7105567	1.00[EUR][1000 genomes]
rs7105802	1.00[EUR][1000 genomes]
rs7105824	1.00[EUR][1000 genomes]
rs7119049	0.91[EUR][1000 genomes]
rs7120131	0.91[EUR][1000 genomes]
rs7128786	0.91[EUR][1000 genomes]
rs7128980	0.91[EUR][1000 genomes]
rs7131044	1.00[EUR][1000 genomes]
rs7131397	0.84[EUR][1000 genomes]
rs7931840	0.91[EUR][1000 genomes]
rs7932197	0.91[EUR][1000 genomes]
rs7933274	0.91[EUR][1000 genomes]
rs7936584	1.00[EUR][1000 genomes]
rs7945735	1.00[EUR][1000 genomes]
rs7945984	0.91[EUR][1000 genomes]
rs7949882	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:73139200-73177800	Weak transcription	Fetal Thymus	thymus
4	chr11:73141800-73179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:73141800-73181400	Weak transcription	Dnd41	blood
6	chr11:73141800-73183000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
8	chr11:73148000-73182000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:73150400-73178800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:73151000-73187000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:73155600-73181200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:73156000-73187800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:73161200-73180600	Weak transcription	Fetal Lung	lung
14	chr11:73161400-73177200	Weak transcription	Left Ventricle	heart
15	chr11:73163600-73179400	Weak transcription	Lung	lung
16	chr11:73163600-73179800	Weak transcription	Aorta	Aorta
17	chr11:73163600-73180000	Weak transcription	Fetal Brain Female	brain
18	chr11:73163600-73180800	Weak transcription	Fetal Intestine Small	intestine
19	chr11:73163800-73225600	Weak transcription	Fetal Stomach	stomach
20	chr11:73165200-73186600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:73166400-73178600	Weak transcription	Right Atrium	heart
22	chr11:73168600-73189800	Weak transcription	Hela-S3	cervix
23	chr11:73170400-73185800	Weak transcription	HepG2	liver
24	chr11:73172400-73177400	Enhancers	Osteobl	bone
25	chr11:73172400-73178400	Weak transcription	Right Ventricle	heart
26	chr11:73172800-73218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:73173400-73179000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:73173600-73181200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:73173800-73177200	Weak transcription	Liver	Liver
30	chr11:73173800-73177200	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:73173800-73177600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr11:73173800-73184400	Weak transcription	Spleen	Spleen
33	chr11:73174000-73177200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr11:73174000-73177200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:73174200-73177400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:73174200-73177400	Enhancers	HSMM	muscle
37	chr11:73174200-73177400	Enhancers	HSMMtube	muscle
38	chr11:73174200-73186800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:73174400-73177400	Enhancers	NHDF-Ad	bronchial
40	chr11:73174600-73187800	Weak transcription	Primary T cells from cord blood	blood
41	chr11:73174800-73177400	Strong transcription	Primary B cells from cord blood	blood
42	chr11:73175000-73179600	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:73175200-73177800	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr11:73175200-73177800	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr11:73175600-73177200	Enhancers	Brain Anterior Caudate	brain
46	chr11:73175600-73177400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:73175800-73177400	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr11:73175800-73179800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:73176000-73177200	Enhancers	Brain Angular Gyrus	brain
50	chr11:73176000-73177400	Enhancers	Brain Cingulate Gyrus	brain

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