Variant report

Variant	rs7128786
Chromosome Location	chr11:73288212-73288213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73287100..73289867-chr11:73302120..73304102,3	K562	blood:
2	chr11:73287022..73288650-chr11:73298158..73299719,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11823008	0.91[EUR][1000 genomes]
rs11823289	1.00[ASW][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12146658	0.85[AMR][1000 genomes]
rs17851510	1.00[MEX][hapmap]
rs34304845	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55727935	0.91[EUR][1000 genomes]
rs55940558	0.91[EUR][1000 genomes]
rs56045329	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56057109	0.91[EUR][1000 genomes]
rs56135026	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56187614	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56193465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56205113	0.91[EUR][1000 genomes]
rs56260110	0.91[EUR][1000 genomes]
rs56262837	0.91[EUR][1000 genomes]
rs56332879	0.91[EUR][1000 genomes]
rs56407713	0.91[EUR][1000 genomes]
rs56701090	0.91[EUR][1000 genomes]
rs57288336	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58619954	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58658035	0.81[EUR][1000 genomes]
rs58850636	0.91[EUR][1000 genomes]
rs59199852	0.91[EUR][1000 genomes]
rs59212255	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59250186	0.91[EUR][1000 genomes]
rs59912809	0.91[EUR][1000 genomes]
rs60578483	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61236919	0.91[EUR][1000 genomes]
rs61361454	0.91[EUR][1000 genomes]
rs61527032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592525	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104483	0.81[ASW][hapmap]
rs7105000	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105567	0.91[EUR][1000 genomes]
rs7105802	0.91[EUR][1000 genomes]
rs7105824	0.91[EUR][1000 genomes]
rs7119049	1.00[EUR][1000 genomes]
rs7120131	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120967	0.84[YRI][hapmap];0.81[EUR][1000 genomes]
rs7128980	0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7131044	0.91[EUR][1000 genomes]
rs7924394	0.94[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7928848	0.83[EUR][1000 genomes]
rs7931840	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932197	0.81[ASW][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933274	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936584	0.91[EUR][1000 genomes]
rs7945735	0.91[EUR][1000 genomes]
rs7945984	0.81[ASW][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949882	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv983188	chr11:73273934-73307064	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:73251000-73288800	Weak transcription	Thymus	Thymus
3	chr11:73253800-73307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:73263200-73306000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:73263800-73288800	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:73266600-73307800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:73272200-73307600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:73274800-73290800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:73275400-73288800	Weak transcription	GM12878-XiMat	blood
10	chr11:73275400-73307000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:73276400-73289800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:73276400-73296800	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:73276400-73299200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:73276400-73307000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:73277200-73299600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:73277400-73307800	Weak transcription	Fetal Intestine Large	intestine
17	chr11:73277600-73293800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:73278200-73289000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:73279200-73288800	Weak transcription	Fetal Thymus	thymus
20	chr11:73279400-73289200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:73279400-73307000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:73279600-73291200	Weak transcription	Ovary	ovary
23	chr11:73280000-73289800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:73280000-73299400	Weak transcription	Fetal Stomach	stomach
25	chr11:73280200-73289000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:73280600-73288800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr11:73280600-73289200	Weak transcription	Primary B cells from cord blood	blood
28	chr11:73280600-73296200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr11:73281400-73289000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:73281600-73288400	Weak transcription	Primary T cells from cord blood	blood
31	chr11:73281600-73288800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:73281600-73307800	Weak transcription	Hela-S3	cervix
33	chr11:73281800-73295400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr11:73282000-73296800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:73282200-73289000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:73282200-73296400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:73282200-73296600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:73282200-73297000	Weak transcription	HMEC	breast
39	chr11:73282200-73297200	Weak transcription	NH-A	brain
40	chr11:73282400-73293800	Weak transcription	HSMM	muscle
41	chr11:73285200-73292400	Weak transcription	Right Atrium	heart
42	chr11:73285200-73294600	Weak transcription	Right Ventricle	heart
43	chr11:73285200-73303600	Weak transcription	Left Ventricle	heart
44	chr11:73285200-73306600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:73285600-73289800	Weak transcription	Fetal Lung	lung
46	chr11:73285800-73289800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:73286000-73289200	Strong transcription	Dnd41	blood
48	chr11:73286000-73294800	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr11:73286200-73295000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr11:73286800-73289000	Enhancers	Brain Anterior Caudate	brain

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