Variant report

Variant	rs57288336
Chromosome Location	chr11:73117561-73117562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73111799..73116221-chr11:73117237..73120913,5	K562	blood:
2	chr11:73117383..73120089-chr11:73130549..73132139,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11823008	0.91[EUR][1000 genomes]
rs11823289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12146658	0.93[AMR][1000 genomes]
rs17851510	0.81[AFR][1000 genomes]
rs34304845	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55727935	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55940558	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56045329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56057109	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56135026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56187614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56193465	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56205113	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56260110	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56262837	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56332879	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56407713	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56701090	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58062099	0.91[AFR][1000 genomes]
rs58619954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58658035	0.81[EUR][1000 genomes]
rs58850636	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59199852	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59212255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59250186	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59912809	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60578483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61236919	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61361454	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61527032	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105567	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105802	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105824	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7119049	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120967	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7128786	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7131044	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7924394	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7928848	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7931840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936584	0.91[EUR][1000 genomes]
rs7945735	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7945984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949882	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73096200-73130200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:73097200-73117600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:73098600-73126000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:73098600-73132400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:73099200-73139800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:73099200-73141000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:73099600-73119200	Weak transcription	Fetal Lung	lung
8	chr11:73100000-73118400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:73100600-73118600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:73101200-73124800	Weak transcription	Psoas Muscle	Psoas
11	chr11:73103600-73118400	Weak transcription	Esophagus	oesophagus
12	chr11:73104600-73123400	Strong transcription	Fetal Stomach	stomach
13	chr11:73104800-73122600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:73106400-73120200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:73107800-73117600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr11:73110000-73120000	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:73110600-73121600	Weak transcription	NHDF-Ad	bronchial
18	chr11:73110600-73123200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:73110800-73123000	Weak transcription	HUVEC	blood vessel
20	chr11:73110800-73123200	Weak transcription	NH-A	brain
21	chr11:73110800-73124000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:73111400-73123200	Strong transcription	Thymus	Thymus
23	chr11:73112800-73118000	Strong transcription	GM12878-XiMat	blood
24	chr11:73112800-73120000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:73112800-73121200	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:73112800-73123400	Strong transcription	Brain Germinal Matrix	brain
27	chr11:73113000-73118800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:73113000-73119000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:73113000-73126200	Weak transcription	Small Intestine	intestine
30	chr11:73113400-73117800	Weak transcription	HSMMtube	muscle
31	chr11:73113400-73125000	Weak transcription	Right Atrium	heart
32	chr11:73113600-73118400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:73113600-73132600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:73113800-73118400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:73113800-73120600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:73113800-73121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr11:73113800-73122800	Strong transcription	Fetal Intestine Small	intestine
38	chr11:73114200-73120200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:73114600-73123000	Strong transcription	Fetal Thymus	thymus
40	chr11:73114600-73125200	Strong transcription	Primary T cells from cord blood	blood
41	chr11:73114800-73122800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:73115000-73121200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr11:73115200-73117800	Weak transcription	HepG2	liver
44	chr11:73115200-73120600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:73115200-73126200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr11:73115200-73132200	Weak transcription	Fetal Heart	heart
47	chr11:73115200-73132400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr11:73115200-73149400	Weak transcription	Fetal Kidney	kidney
49	chr11:73115400-73121400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:73115600-73117800	Strong transcription	Primary monocytes fromperipheralblood	blood

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