Variant report

Variant	rs7119049
Chromosome Location	chr11:73280906-73280907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73275181..73277869-chr11:73279088..73282119,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11823008	0.91[EUR][1000 genomes]
rs11823289	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34304845	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55727935	0.91[EUR][1000 genomes]
rs55940558	0.91[EUR][1000 genomes]
rs56045329	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56057109	0.91[EUR][1000 genomes]
rs56135026	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56187614	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56193465	1.00[EUR][1000 genomes]
rs56205113	0.91[EUR][1000 genomes]
rs56260110	0.91[EUR][1000 genomes]
rs56262837	0.91[EUR][1000 genomes]
rs56332879	0.91[EUR][1000 genomes]
rs56407713	0.91[EUR][1000 genomes]
rs56701090	0.91[EUR][1000 genomes]
rs57288336	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58619954	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58658035	0.81[EUR][1000 genomes]
rs58850636	0.91[EUR][1000 genomes]
rs59199852	0.91[EUR][1000 genomes]
rs59212255	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59250186	0.91[EUR][1000 genomes]
rs59912809	0.91[EUR][1000 genomes]
rs60578483	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61236919	0.91[EUR][1000 genomes]
rs61361454	0.91[EUR][1000 genomes]
rs61527032	1.00[EUR][1000 genomes]
rs6592525	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105000	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105567	0.91[EUR][1000 genomes]
rs7105802	0.91[EUR][1000 genomes]
rs7105824	0.91[EUR][1000 genomes]
rs7120131	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120967	0.81[EUR][1000 genomes]
rs7128786	1.00[EUR][1000 genomes]
rs7128980	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7131044	0.91[EUR][1000 genomes]
rs7924394	0.81[EUR][1000 genomes]
rs7928848	0.83[EUR][1000 genomes]
rs7931840	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932197	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933274	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936584	0.91[EUR][1000 genomes]
rs7945735	0.91[EUR][1000 genomes]
rs7945984	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949882	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv983188	chr11:73273934-73307064	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73250000-73307800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:73250800-73282800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:73251000-73288800	Weak transcription	Thymus	Thymus
4	chr11:73253800-73307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:73262200-73281000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:73263200-73306000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:73263800-73288800	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:73264600-73287000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:73265400-73287200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:73266600-73307800	Weak transcription	Fetal Intestine Small	intestine
11	chr11:73267400-73281400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:73267400-73284800	Weak transcription	Right Atrium	heart
13	chr11:73268400-73281000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:73270600-73288000	Weak transcription	NHLF	lung
15	chr11:73272200-73307600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:73274600-73287000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:73274600-73287000	Weak transcription	Brain Substantia Nigra	brain
18	chr11:73274800-73290800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr11:73275200-73286800	Weak transcription	Brain Anterior Caudate	brain
20	chr11:73275200-73287000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:73275400-73284600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:73275400-73288800	Weak transcription	GM12878-XiMat	blood
23	chr11:73275400-73307000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:73276200-73287200	Weak transcription	Brain Angular Gyrus	brain
25	chr11:73276400-73287400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:73276400-73289800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:73276400-73296800	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:73276400-73299200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:73276400-73307000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:73276600-73286800	Weak transcription	Fetal Brain Female	brain
31	chr11:73277000-73281200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:73277200-73285800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:73277200-73299600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr11:73277400-73281600	Weak transcription	HSMM	muscle
35	chr11:73277400-73307800	Weak transcription	Fetal Intestine Large	intestine
36	chr11:73277600-73281000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:73277600-73286800	Weak transcription	Brain Germinal Matrix	brain
38	chr11:73277600-73287200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:73277600-73293800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:73278000-73281200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:73278000-73281200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:73278000-73288000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:73278200-73281200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:73278200-73281200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:73278200-73284000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:73278200-73284000	Weak transcription	Left Ventricle	heart
47	chr11:73278200-73289000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:73278400-73281200	Weak transcription	Osteobl	bone
49	chr11:73278400-73286800	Weak transcription	Brain Hippocampus Middle	brain
50	chr11:73278600-73284000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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