Variant report

Variant	rs6592525
Chromosome Location	chr11:73166834-73166835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73166334..73168840-chr11:73169378..73172433,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11823008	0.91[EUR][1000 genomes]
rs11823289	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12146658	0.93[AMR][1000 genomes]
rs34304845	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55727935	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55940558	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56045329	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56057109	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56135026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56187614	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56193465	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56205113	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56260110	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56262837	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56332879	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56407713	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56701090	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57288336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58619954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58658035	0.81[EUR][1000 genomes]
rs58850636	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59199852	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59212255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59250186	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59912809	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60578483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61236919	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61361454	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61527032	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105567	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105802	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105824	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7119049	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7120967	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7128786	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7131044	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7924394	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7928848	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7931840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936584	0.91[EUR][1000 genomes]
rs7945735	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7945984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949882	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv508641	chr11:73149281-73235528	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73123800-73209600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:73131000-73190000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:73138000-73176800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:73139200-73177800	Weak transcription	Fetal Thymus	thymus
5	chr11:73141600-73173600	Weak transcription	Pancreas	Pancrea
6	chr11:73141800-73179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:73141800-73181400	Weak transcription	Dnd41	blood
8	chr11:73141800-73183000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:73141800-73231600	Weak transcription	Thymus	Thymus
10	chr11:73148000-73182000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:73150000-73172400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:73150000-73175800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:73150400-73172200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:73150400-73178800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:73151000-73187000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:73155600-73181200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:73155800-73171800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:73156000-73187800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:73157000-73167600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:73157800-73170000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr11:73157800-73171800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:73157800-73172000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:73157800-73172000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:73157800-73172200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:73157800-73172800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:73158200-73170000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr11:73158200-73172600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:73158200-73174400	Weak transcription	Ovary	ovary
29	chr11:73158600-73172200	Weak transcription	Psoas Muscle	Psoas
30	chr11:73161200-73180600	Weak transcription	Fetal Lung	lung
31	chr11:73161400-73177200	Weak transcription	Left Ventricle	heart
32	chr11:73163000-73173000	Weak transcription	Primary B cells from cord blood	blood
33	chr11:73163600-73179400	Weak transcription	Lung	lung
34	chr11:73163600-73179800	Weak transcription	Aorta	Aorta
35	chr11:73163600-73180000	Weak transcription	Fetal Brain Female	brain
36	chr11:73163600-73180800	Weak transcription	Fetal Intestine Small	intestine
37	chr11:73163800-73172000	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:73163800-73225600	Weak transcription	Fetal Stomach	stomach
39	chr11:73164200-73174000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:73165000-73167000	Enhancers	Brain Substantia Nigra	brain
41	chr11:73165200-73172000	Weak transcription	Adipose Nuclei	Adipose
42	chr11:73165200-73186600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:73165600-73167000	Enhancers	Brain Hippocampus Middle	brain
44	chr11:73165600-73168000	Enhancers	Brain Anterior Caudate	brain
45	chr11:73165800-73167600	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr11:73166000-73172200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:73166200-73167000	Strong transcription	Primary T cells from cord blood	blood
48	chr11:73166400-73178600	Weak transcription	Right Atrium	heart
49	chr11:73166600-73167400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:73166600-73167800	Weak transcription	Brain Angular Gyrus	brain

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